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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264773 (108 seq.)
>W1711021988
LQZQ01000052
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
39892
39819
-
Lys
TTT
[ENA]
¡û
>W1711026990
LRDB01000001
Bacteroidota
Roseivirga echinicomitans [LRDB]
107680
107607
-
Lys
TTT
[ENA]
¡û
>W1711047561
LRPB01000049
Bacteroidota
Roseivirga seohaensis [LRPB]
43531
43604
+
Lys
TTT
[ENA]
¡û
>W131231188
AUIG01000029
Bacteroidota
Salinimicrobium xinjiangense DSM 19287 [AUIG]
18523
18598
+
Lys
TTT
[ENA]
¡û
>W131233853
AUKI01000005
Bacteroidota
Salinimicrobium terrae DSM 17865 [AUKI]
18532
18607
+
Lys
TTT
[ENA]
¡û
>W1711356791
MDGQ01000003
Bacteroidota
Roseivirga misakiensis [MDGQ]
380886
380959
+
Lys
TTT
[ENA]
¡û
>W131109063
APHJ01000027
Bacteroidota
Gillisia sp. CAL575 [APHJ]
1
76
+
Lys
TTT
[ENA]
¡û
>W131109071
APHJ01000050
Bacteroidota
Gillisia sp. CAL575 [APHJ]
75
2
-
Lys
TTT
[ENA]
¡û
>W131233822
AUKH01000002
Bacteroidota
Gillisia sp. JM1 [AUKH]
669199
669126
-
Lys
TTT
[ENA]
¡û
>W131233823
AUKH01000002
Bacteroidota
Gillisia sp. JM1 [AUKH]
669083
669008
-
Lys
TTT
[ENA]
¡û
>WENV180046243
MPLT02070566
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
9367
9294
-
Lys
TTT
[ENA]
¡û
>WENV180362366
OBNW01137765
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
38
111
+
Lys
TTT
[ENA]
¡û
>WENV180367953
OBOF01012330
[OBOF] marine metagenome; ENVO:00002010
372
445
+
Lys
TTT
[ENA]
¡û
>WENV180383768
OBOV01019238
[OBOV] marine metagenome; ENV:00002010
425
352
-
Lys
TTT
[ENA]
¡û
>WENV180586925
OCON01008832
[OCON] marine metagenome; seawater
135
60
-
Lys
TTT
[ENA]
¡û
>WENV181391654
OFRT01035654
[OFRT] seawater metagenome; seawater
24
97
+
Lys
TTT
[ENA]
¡û
>WENV182584288
OJHF01042101
[OJHF] seawater metagenome; Sea water
139
65
-
Lys
TTT
[ENA]
¡û
>WENV183058134
OLHN01007324
[OLHN] seawater metagenome; Sea water
144
71
-
Lys
TTT
[ENA]
¡û
>WENV183698837
OZSS01005483
[OZSS] metagenome; Seawater sample
4992
4919
-
Lys
TTT
[ENA]
¡û
>WENV183700133
OZSS01107411
[OZSS] metagenome; Seawater sample
566
641
+
Lys
TTT
[ENA]
¡û
>WENV183749875
PPFU01224688
[PPFU] hypolithon metagenome; Antarctic Hypolithon
474
401
-
Lys
TTT
[ENA]
¡û
>WENV183749876
PPFU01224688
[PPFU] hypolithon metagenome; Antarctic Hypolithon
242
169
-
Lys
TTT
[ENA]
¡û
>WENV183805445
PVBE011020310
[PVBE] marine metagenome; water
14354
14427
+
Lys
TTT
[ENA]
¡û
>WENV170155752
CEOG01106464
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
931
1004
+
Lys
TTT
[ENA]
¡û
>WENV170521659
CEWG01026705
[CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
257
182
-
Lys
TTT
[ENA]
¡û
>WENV170608658
FUWD011045563
[FUWD] metagenome; unknown
25
100
+
Lys
TTT
[ENA]
¡û
>WENV170622764
FUWD013120592
[FUWD] metagenome; unknown
459
384
-
Lys
TTT
[ENA]
¡û
>WENV170623531
FUWD013156073
[FUWD] metagenome; unknown
76
151
+
Lys
TTT
[ENA]
¡û
>WENV170626755
FUWD013229299
[FUWD] metagenome; unknown
3411
3486
+
Lys
TTT
[ENA]
¡û
>WENV170630977
FUWD013334366
[FUWD] metagenome; unknown
459
384
-
Lys
TTT
[ENA]
¡û
>WENV170631801
FUWD013366169
[FUWD] metagenome; unknown
76
151
+
Lys
TTT
[ENA]
¡û
>WENV170631830
FUWD013366865
[FUWD] metagenome; unknown
41123
41198
+
Lys
TTT
[ENA]
¡û
>WENV170765030
LWDU01034812
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
110742
110815
+
Lys
TTT
[ENA]
¡û
>WENV170769412
LXNH01053686
[LXNH] seawater metagenome; marine seawater
260
335
+
Lys
TTT
[ENA]
¡û
>WENV170794421
MDSV01131964
[MDSV] marine metagenome; seawater
1578
1653
+
Lys
TTT
[ENA]
¡û
>WENV170794485
MDSV01132894
[MDSV] marine metagenome; seawater
8214
8287
+
Lys
TTT
[ENA]
¡û
>WENV170797982
MDSV01189429
[MDSV] marine metagenome; seawater
59386
59461
+
Lys
TTT
[ENA]
¡û
>WENV170817335
MDSX01048548
[MDSX] marine metagenome; seawater
78
3
-
Lys
TTT
[ENA]
¡û
>WENV170823373
MDSY01056413
[MDSY] marine metagenome; seawater
22419
22494
+
Lys
TTT
[ENA]
¡û
>WENV170824625
MDSY01079154
[MDSY] marine metagenome; seawater
81
6
-
Lys
TTT
[ENA]
¡û
>WENV170829180
MDSZ01004364
[MDSZ] marine metagenome; seawater
10629
10704
+
Lys
TTT
[ENA]
¡û
>WENV170829823
MDSZ01015449
[MDSZ] marine metagenome; seawater
3911
3984
+
Lys
TTT
[ENA]
¡û
>WENV170846914
MDTA01050864
[MDTA] marine metagenome; seawater
74
-1
-
Lys
TTT
[ENA]
¡û
>WENV170852498
MDTA01151578
[MDTA] marine metagenome; seawater
2021
1946
-
Lys
TTT
[ENA]
¡û
>WENV170859563
MDTB01037939
[MDTB] marine metagenome; seawater
211
138
-
Lys
TTT
[ENA]
¡û
>WENV170861990
MDTB01071621
[MDTB] marine metagenome; seawater
61680
61753
+
Lys
TTT
[ENA]
¡û
>WENV170861991
MDTB01071621
[MDTB] marine metagenome; seawater
61758
61833
+
Lys
TTT
[ENA]
¡û
>WENV170861996
MDTB01071665
[MDTB] marine metagenome; seawater
757
684
-
Lys
TTT
[ENA]
¡û
>WENV170871755
MDTB01210039
[MDTB] marine metagenome; seawater
6635
6562
-
Lys
TTT
[ENA]
¡û
>WENV170877386
MDTC01056957
[MDTC] marine metagenome; seawater
149
76
-
Lys
TTT
[ENA]
¡û
>WENV170879636
MDTC01098485
[MDTC] marine metagenome; seawater
77
2
-
Lys
TTT
[ENA]
¡û
>WENV170884633
MDTC01186688
[MDTC] marine metagenome; seawater
9546
9621
+
Lys
TTT
[ENA]
¡û
>WENV170887073
MDTC01233403
[MDTC] marine metagenome; seawater
922
847
-
Lys
TTT
[ENA]
¡û
>WENV170889243
MDTC01271902
[MDTC] marine metagenome; seawater
27055
27130
+
Lys
TTT
[ENA]
¡û
>WENV170901882
MDTD01177307
[MDTD] marine metagenome; seawater
876
949
+
Lys
TTT
[ENA]
¡û
>WENV170902482
MDTD01185916
[MDTD] marine metagenome; seawater
19749
19824
+
Lys
TTT
[ENA]
¡û
>WENV170913880
MDTE01140278
[MDTE] marine metagenome; seawater
3590
3515
-
Lys
TTT
[ENA]
¡û
>WENV170919838
MDTF01012715
[MDTF] marine metagenome; seawater
13
86
+
Lys
TTT
[ENA]
¡û
>WENV170921602
MDTG01017142
[MDTG] marine metagenome; seawater
75
2
-
Lys
TTT
[ENA]
¡û
>WENV170924520
MDTG01067138
[MDTG] marine metagenome; seawater
2633
2558
-
Lys
TTT
[ENA]
¡û
>WENV170929330
MDTG01148471
[MDTG] marine metagenome; seawater
81
8
-
Lys
TTT
[ENA]
¡û
>WENV170934305
MDTG01236306
[MDTG] marine metagenome; seawater
23915
23988
+
Lys
TTT
[ENA]
¡û
>WENV170935155
MDTG01251833
[MDTG] marine metagenome; seawater
23772
23845
+
Lys
TTT
[ENA]
¡û
>WENV170935908
MDTG01265828
[MDTG] marine metagenome; seawater
4076
4149
+
Lys
TTT
[ENA]
¡û
>WENV170942442
MDTG01378132
[MDTG] marine metagenome; seawater
92
17
-
Lys
TTT
[ENA]
¡û
>WENV170949821
MEHZ011456275
[MEHZ] marine metagenome; marine surface water
3
76
+
Lys
TTT
[ENA]
¡û
>WENV170949822
MEHZ011456275
[MEHZ] marine metagenome; marine surface water
97
172
+
Lys
TTT
[ENA]
¡û
>WENV170952576
MEHZ011605263
[MEHZ] marine metagenome; marine surface water
3235
3310
+
Lys
TTT
[ENA]
¡û
>WENV170952668
MEHZ011609418
[MEHZ] marine metagenome; marine surface water
435
360
-
Lys
TTT
[ENA]
¡û
>WENV170990702
MWWA01031783
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
390
465
+
Lys
TTT
[ENA]
¡û
>C191182971
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
3265980
3265907
-
Lys
TTT
-
¡û
>C191182972
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
3265614
3265541
-
Lys
TTT
-
¡û
>W141560688
JHXV01000012
Bacteroidota
Crocinitomix catalasitica ATCC 23190 [JHXV]
136039
136114
+
Lys
TTT
[ENA]
¡û
>W141818627
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
512983
512908
-
Lys
TTT
[ENA]
¡û
>W141818628
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
512869
512794
-
Lys
TTT
[ENA]
¡û
>W1911496095
OCMF01000001
Bacteroidota
Salinimicrobium sediminis CGMCC 1.12641 [OCMF]
18676
18749
+
Lys
TTT
[ENA]
¡û
>SRA1024774
SRR035084.398468
454 Sequencing (SRP001805)
308
381
+
Lys
TTT
[SRA]
>W2010572343
JAAVJQ010000012
Bacteroidota
Salinimicrobium sp. CDJ15-81-2 [JAAVJQ]
19425
19498
+
Lys
TTT
[ENA]
¡û
>W2010572387
JAAVJR010000010
Bacteroidota
Salinimicrobium sp. CDJ15-91 [JAAVJR]
6001
6074
+
Lys
TTT
[ENA]
¡û
>W2011156999
OCMF01000001
Bacteroidota
Salinimicrobium sediminis CGMCC 1.12641 [OCMF]
18676
18749
+
Lys
TTT
[ENA]
¡û
>W2011375563
RBLG01000005
Bacteroidota
Gillisia mitskevichiae DSM 19839 [RBLG]
17787
17860
+
Lys
TTT
[ENA]
¡û
>W2011375564
RBLG01000005
Bacteroidota
Gillisia mitskevichiae DSM 19839 [RBLG]
17902
17975
+
Lys
TTT
[ENA]
¡û
>W2011634876
SMGS01000008
Bacteroidota
Roseivirga ehrenbergii DSM 102268 [SMGS]
47461
47534
+
Lys
TTT
[ENA]
¡û
>W2012042323
VISE01000001
Bacteroidota
Gillisia sp. Hel_I_86 [VISE]
2683222
2683149
-
Lys
TTT
[ENA]
¡û
>W2012042324
VISE01000001
Bacteroidota
Gillisia sp. Hel_I_86 [VISE]
2683024
2682951
-
Lys
TTT
[ENA]
¡û
>W2012068493
VKDC01000019
Bacteroidota
Fulvivirga sp. M361 [VKDC]
64914
64838
-
Lys
TTT
[ENA]
¡û
>W2012107602
VORY01000033
Bacteroidota
Gillisia hiemivivida IC154 [VORY]
712
639
-
Lys
TTT
[ENA]
¡û
>W2012107603
VORY01000033
Bacteroidota
Gillisia hiemivivida IC154 [VORY]
596
523
-
Lys
TTT
[ENA]
¡û
>SRA1053664
SRR035098.461850
454 Sequencing (SRP001819)
375
302
-
Lys
TTT
[SRA]
>C201113149
CP042476
Bacteroidota
Antarcticibacterium sp. PAMC 28998 [CP042476]
165680
165607
-
Lys
TTT
-
¡û
>C201113150
CP042476
Bacteroidota
Antarcticibacterium sp. PAMC 28998 [CP042476]
165560
165487
-
Lys
TTT
-
¡û
>C211426015
OU342399
Bacteroidota
Flavobacteriaceae bacterium AHE01FL [OU342399]
941951
941878
-
Lys
TTT
-
¡û
>C211426016
OU342399
Bacteroidota
Flavobacteriaceae bacterium AHE01FL [OU342399]
941863
941790
-
Lys
TTT
-
¡û
>C231289097
CP091036
Bacteroidota
Antarcticibacterium sp. 1MA-6-2 [CP091036]
4245508
4245435
-
Lys
TTT
-
¡û
>C231289098
CP091036
Bacteroidota
Antarcticibacterium sp. 1MA-6-2 [CP091036]
4245260
4245187
-
Lys
TTT
-
¡û
>W1511387663
JSVA01000011
Bacteroidota
Roseivirga seohaensis D-25 [JSVA]
27541
27614
+
Lys
TTT
[ENA]
¡û
>WENV055683
AACY023235913
Marine microbial communities from Global Ocean Sampling (GOS)
480
555
+
Lys
TTT
[ENA]
>WENV064560
AACY023548219
Marine microbial communities from Global Ocean Sampling (GOS)
912
837
-
Lys
TTT
[ENA]
>W121034556
AHKR01000029
Bacteroidota
Gillisia limnaea DSM 15749 [AHKR]
603714
603639
-
Lys
TTT
[ENA]
¡û
>W121034557
AHKR01000029
Bacteroidota
Gillisia limnaea DSM 15749 [AHKR]
603614
603539
-
Lys
TTT
[ENA]
¡û
>W121063896
AJLT01000064
Bacteroidota
Gillisia marina CBA3202 [AJLT]
18811
18884
+
Lys
TTT
[ENA]
¡û
>W121063897
AJLT01000064
Bacteroidota
Gillisia marina CBA3202 [AJLT]
18927
19002
+
Lys
TTT
[ENA]
¡û
>WENV071613
AACY023853970
Marine microbial communities from Global Ocean Sampling (GOS)
260
335
+
Lys
TTT
[ENA]
>WENV072532
AACY023888007
Marine microbial communities from Global Ocean Sampling (GOS)
707
632
-
Lys
TTT
[ENA]
>WENV075464
AACY024035380
Marine microbial communities from Global Ocean Sampling (GOS)
445
370
-
Lys
TTT
[ENA]
>W1610870276
LQZQ01000052
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
39892
39819
-
Lys
TTT
[ENA]
¡û
>W1610875102
LRDB01000001
Bacteroidota
Roseivirga echinicomitans [LRDB]
107680
107607
-
Lys
TTT
[ENA]
¡û
>W1610888690
LRPB01000049
Bacteroidota
Roseivirga seohaensis [LRPB]
43531
43604
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK