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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26487 (119 seq.)
>W1710785270
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
296202
296113
-
Ser
CGA
[ENA]
¡û
>W1710785675
LJIB01000025
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
24858
24947
+
Ser
CGA
[ENA]
¡û
>W1710861528
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
101736
101825
+
Ser
CGA
[ENA]
¡û
>W1710863234
LMEY01000003
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
11000
10911
-
Ser
CGA
[ENA]
¡û
>W1710864766
LMGD01000003
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
2500
2411
-
Ser
CGA
[ENA]
¡û
>W1710867362
LMIF01000002
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
11001
10912
-
Ser
CGA
[ENA]
¡û
>W1710868579
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
101711
101800
+
Ser
CGA
[ENA]
¡û
>W1710882252
LMTR01000075
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
42902
42813
-
Ser
CGA
[ENA]
¡û
>W131036187
ALJF01000009
Alphaproteobacteria
Agrobacterium albertimagni AOL15 [ALJF]
46382
46293
-
Ser
CGA
[ENA]
¡û
>W1711325947
MBEX01000010
Alphaproteobacteria
Agrobacterium vitis [MBEX]
183690
183601
-
Ser
CGA
[ENA]
¡û
>W1711326299
MBFE01000051
Alphaproteobacteria
Agrobacterium vitis [MBFE]
184112
184023
-
Ser
CGA
[ENA]
¡û
>W1711384742
MEDI01000795
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
18
107
+
Ser
CGA
[ENA]
¡û
>W131174571
ARIO01000030
Alphaproteobacteria
Rhizobium sp. 2MFCol3.1 [ARIO]
40693
40782
+
Ser
CGA
[ENA]
¡û
>PL171001256
CP016500
Alphaproteobacteria
Agrobacterium sp. RAC06 plasmid:pBSY240_1
107625
107714
+
Ser
CGA
[ENA]
¡û
>WENV180022143
FTFQ01000265
[FTFQ] metagenome; soil
1120
1031
-
Ser
CGA
[ENA]
¡û
>WENV180031375
FTJO01038200
[FTJO] metagenome; soil
871
960
+
Ser
CGA
[ENA]
¡û
>WENV180105477
OAPD01069550
[OAPD] marine metagenome; 2010
287
376
+
Ser
CGA
[ENA]
¡û
>WENV181164991
OEIR01503272
[OEIR] soil metagenome; soil
131
42
-
Ser
CGA
[ENA]
¡û
>WENV181414332
OGCL01000223
[OGCL] hot springs metagenome; Hot spring water
62348
62437
+
Ser
CGA
[ENA]
¡û
>WENV181416134
OGCL01054986
[OGCL] hot springs metagenome; Hot spring water
786
875
+
Ser
CGA
[ENA]
¡û
>W141277023
JAEG01000008
Alphaproteobacteria
Ciceribacter selenitireducens ATCC BAA-1503 [JAEG]
293223
293134
-
Ser
CGA
[ENA]
¡û
>WENV183692810
ORMF011979582
[ORMF] groundwater metagenome; groundwater
283
372
+
Ser
CGA
[ENA]
¡û
>WENV170668323
LADL02002883
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
13780
13691
-
Ser
CGA
[ENA]
¡û
>WENV170680695
LFEF01011152
[LFEF] freshwater metagenome; waterbloom
6354
6265
-
Ser
CGA
[ENA]
¡û
>WENV171003569
NNBU01000546
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
68856
68945
+
Ser
CGA
[ENA]
¡û
>C181051581
CP021371
Alphaproteobacteria
Rhizobium sp. ACO-34A [CP021371]
4582466
4582555
+
Ser
CGA
-
¡û
>C181051582
CP021371
Alphaproteobacteria
Rhizobium sp. ACO-34A [CP021371]
4599821
4599910
+
Ser
CGA
-
¡û
>W1910232034
FPEJ01000001
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
1155550
1155639
+
Ser
CGA
[ENA]
¡û
>W1810195492
PKRP01000001
Alphaproteobacteria
Rhizobium sp. TH135 [PKRP]
7065
6976
-
Ser
CGA
[ENA]
¡û
>SRA1004162
SRR002328.177993
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
90
1
-
Ser
CGA
[SRA]
>W1810366554
PVWU01000014
Alphaproteobacteria
Agrobacterium pusense S2 [PVWU]
80080
80169
+
Ser
CGA
[ENA]
¡û
>W1810390344
PXYJ01000002
Alphaproteobacteria
Allosphingosinicella vermicomposti KCTC 22446 [PXYJ]
463363
463274
-
Ser
CGA
[ENA]
¡û
>W1810670691
QJRY01000001
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
864435
864524
+
Ser
CGA
[ENA]
¡û
>W1810670706
QJRY01000003
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
404242
404153
-
Ser
CGA
[ENA]
¡û
>W1810917621
QWBU01000008
Alphaproteobacteria
Shinella sp. WSJ-2 [QWBU]
219785
219874
+
Ser
CGA
[ENA]
¡û
>W1810917635
QWBU01000022
Alphaproteobacteria
Shinella sp. WSJ-2 [QWBU]
1232
1321
+
Ser
CGA
[ENA]
¡û
>W1810917636
QWBU01000022
Alphaproteobacteria
Shinella sp. WSJ-2 [QWBU]
26093
26182
+
Ser
CGA
[ENA]
¡û
>PL201000564
CP042825
Alphaproteobacteria
Rhizobium sp. WL3 plasmid:unnamed2 [CP042825]
599147
599236
+
Ser
CGA
[ENA]
¡û
>PL201000686
CP045856
Alphaproteobacteria
Agrobacterium sp. MA01 plasmid:punanmed2 [CP045856]
182747
182836
+
Ser
CGA
[ENA]
¡û
>PL201001291
CP058351
Alphaproteobacteria
Rhizobium sp. ADMK78 plasmid:pPRADMK78_01 [CP058351]
441280
441191
-
Ser
CGA
[ENA]
¡û
>C151101656
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
4088705
4088616
-
Ser
CGA
[Ensembl]
¡û
>W2010169601
CABFWF010000020
Alphaproteobacteria
Rhizobium endolithicum JC140 [CABFWF]
14155
14244
+
Ser
CGA
[ENA]
¡û
>W2010215056
CABHNZ010000011
Alphaproteobacteria
Shinella sp. UYSO24 [CABHNZ]
197237
197326
+
Ser
CGA
[ENA]
¡û
>W2010321017
CACSJP010000001
Alphaproteobacteria
Rhizobium sp. 18065 [CACSJP]
498341
498252
-
Ser
CGA
[ENA]
¡û
>W2010385577
FPEJ01000001
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
1155550
1155639
+
Ser
CGA
[ENA]
¡û
>W2010435532
JAAALD010000012
Alphaproteobacteria
Rhizobium sp. CRIBSB [JAAALD]
76584
76495
-
Ser
CGA
[ENA]
¡û
>W2010503153
JAALXZ010000013
Alphaproteobacteria
Agrobacterium vitis T267/94 [JAALXZ]
279410
279499
+
Ser
CGA
[ENA]
¡û
>W2010503154
JAALXZ010000013
Alphaproteobacteria
Agrobacterium vitis T267/94 [JAALXZ]
293983
294072
+
Ser
CGA
[ENA]
¡û
>W2010503203
JAALYA010000014
Alphaproteobacteria
Agrobacterium vitis P86/93 [JAALYA]
279288
279377
+
Ser
CGA
[ENA]
¡û
>W2010503204
JAALYA010000014
Alphaproteobacteria
Agrobacterium vitis P86/93 [JAALYA]
293861
293950
+
Ser
CGA
[ENA]
¡û
>W2010599162
JABFNP010000001
Alphaproteobacteria
Agrobacterium vitis K306 [JABFNP]
3352535
3352446
-
Ser
CGA
[ENA]
¡û
>W2010700593
JACHGA010000004
Alphaproteobacteria
Rhizobium rosettiformans DSM 26376 [JACHGA]
2822
2733
-
Ser
CGA
[ENA]
¡û
>W2010720394
JACIAG010000011
Alphaproteobacteria
Rhizobium sp. BK393 [JACIAG]
119421
119332
-
Ser
CGA
[ENA]
¡û
>W2010725445
JACIED010000004
Alphaproteobacteria
Rhizobium taibaishanense DSM 100021 [JACIED]
188829
188740
-
Ser
CGA
[ENA]
¡û
>W2010743363
JACJVI010000013
Alphaproteobacteria
Rhizobium sp. AQ_MP [JACJVI]
4146
4235
+
Ser
CGA
[ENA]
¡û
>W2011234972
PZPO01000001
Alphaproteobacteria
Hyphomicrobium sulfonivorans S1 [PZPO]
509785
509696
-
Ser
CGA
[ENA]
¡û
>W2011290505
QRFD01000004
Alphaproteobacteria
Agrobacterium vitis SBV_10752 [QRFD]
182719
182630
-
Ser
CGA
[ENA]
¡û
>W2011355272
RAQG01000004
Alphaproteobacteria
Rhizobium sp. AG855 [RAQG]
104571
104660
+
Ser
CGA
[ENA]
¡û
>W2011625291
SLYW01000008
Alphaproteobacteria
Neorhizobium sp. JUb45 [SLYW]
123879
123968
+
Ser
CGA
[ENA]
¡û
>W2011630906
SMCL01000008
Alphaproteobacteria
Neorhizobium sp. S3-V5DH [SMCL]
128640
128729
+
Ser
CGA
[ENA]
¡û
>W2011687998
SSBC01000016
Alphaproteobacteria
Asticcacaulis sp. 3.1105 [SSBC]
4349
4260
-
Ser
CGA
[ENA]
¡û
>W2011695292
STGU01000004
Alphaproteobacteria
Rhizobium rosettiformans W3 [STGU]
2644
2555
-
Ser
CGA
[ENA]
¡û
>W2011695363
STGV01000004
Alphaproteobacteria
Rhizobium ipomoeae shin9-1 [STGV]
204591
204680
+
Ser
CGA
[ENA]
¡û
>W2011695364
STGV01000004
Alphaproteobacteria
Rhizobium ipomoeae shin9-1 [STGV]
219549
219638
+
Ser
CGA
[ENA]
¡û
>W2011766703
UBJO01000049
Alphaproteobacteria
Rhizobiales bacterium [UBJO]
135754
135843
+
Ser
CGA
[ENA]
¡û
>W2011767549
UBKL01000029
Alphaproteobacteria
Rhizobiales bacterium [UBKL]
106360
106449
+
Ser
CGA
[ENA]
¡û
>W2011767823
UBKR01000027
Alphaproteobacteria
Rhizobiales bacterium [UBKR]
255717
255806
+
Ser
CGA
[ENA]
¡û
>W2011767824
UBKR01000027
Alphaproteobacteria
Rhizobiales bacterium [UBKR]
274252
274341
+
Ser
CGA
[ENA]
¡û
>W2011769420
UBMF01000016
Alphaproteobacteria
Rhizobiales bacterium [UBMF]
121483
121572
+
Ser
CGA
[ENA]
¡û
>W2011771150
UBNV01000030
Alphaproteobacteria
Rhizobiales bacterium [UBNV]
22969
23058
+
Ser
CGA
[ENA]
¡û
>W2011772667
UBPG01000020
Alphaproteobacteria
Rhizobiales bacterium [UBPG]
211830
211741
-
Ser
CGA
[ENA]
¡û
>W2011772974
UBPO01000011
Alphaproteobacteria
Rhizobiales bacterium [UBPO]
171148
171237
+
Ser
CGA
[ENA]
¡û
>W2011774424
UBQV01000012
Alphaproteobacteria
Rhizobiales bacterium [UBQV]
51150
51061
-
Ser
CGA
[ENA]
¡û
>W2011777585
UBTQ01000014
Alphaproteobacteria
Rhizobiales bacterium [UBTQ]
171110
171199
+
Ser
CGA
[ENA]
¡û
>W2011777586
UBTQ01000014
Alphaproteobacteria
Rhizobiales bacterium [UBTQ]
188465
188554
+
Ser
CGA
[ENA]
¡û
>W2011778664
UBUP01000001
Alphaproteobacteria
Rhizobiales bacterium [UBUP]
104250
104339
+
Ser
CGA
[ENA]
¡û
>W2011778930
UBUV01000007
Alphaproteobacteria
Rhizobiales bacterium [UBUV]
151187
151276
+
Ser
CGA
[ENA]
¡û
>W2011781621
UBXF01000033
Alphaproteobacteria
Rhizobiales bacterium [UBXF]
17641
17552
-
Ser
CGA
[ENA]
¡û
>W2011785106
UCAH01000036
Alphaproteobacteria
Rhizobiales bacterium [UCAH]
6204
6115
-
Ser
CGA
[ENA]
¡û
>W2011785423
UCAQ01000004
Alphaproteobacteria
Rhizobiales bacterium [UCAQ]
104250
104339
+
Ser
CGA
[ENA]
¡û
>W2011788622
UCDK01000005
Alphaproteobacteria
Rhizobiales bacterium [UCDK]
253435
253524
+
Ser
CGA
[ENA]
¡û
>W2011789421
UCEC01000001
Alphaproteobacteria
Rhizobiales bacterium [UCEC]
210365
210276
-
Ser
CGA
[ENA]
¡û
>W2011792026
UCGH01000009
Alphaproteobacteria
Rhizobiales bacterium [UCGH]
254327
254416
+
Ser
CGA
[ENA]
¡û
>W2011792566
UCGU01000002
Alphaproteobacteria
Rhizobiales bacterium [UCGU]
110366
110455
+
Ser
CGA
[ENA]
¡û
>W2011793113
UCHG01000008
Alphaproteobacteria
Rhizobiales bacterium [UCHG]
252506
252595
+
Ser
CGA
[ENA]
¡û
>W2011794244
UCIF01000027
Alphaproteobacteria
Rhizobiales bacterium [UCIF]
9275
9186
-
Ser
CGA
[ENA]
¡û
>W2011796162
UCJX01000012
Alphaproteobacteria
Rhizobiales bacterium [UCJX]
150631
150720
+
Ser
CGA
[ENA]
¡û
>W2011796422
UCKD01000008
Alphaproteobacteria
Rhizobiales bacterium [UCKD]
252463
252552
+
Ser
CGA
[ENA]
¡û
>W2011799469
UCMS01000014
Alphaproteobacteria
Rhizobiales bacterium [UCMS]
266853
266764
-
Ser
CGA
[ENA]
¡û
>W2011800800
UCNX01000016
Alphaproteobacteria
Rhizobiales bacterium [UCNX]
104250
104339
+
Ser
CGA
[ENA]
¡û
>W2011972817
VCHO01000001
Alphaproteobacteria
Rhizobium sp. ADMK78 [VCHO]
256624
256713
+
Ser
CGA
[ENA]
¡û
>W2011972861
VCHO01000024
Alphaproteobacteria
Rhizobium sp. ADMK78 [VCHO]
151
62
-
Ser
CGA
[ENA]
¡û
>W2012021663
VFPK01000005
Alphaproteobacteria
Rhizobium sp. SLBN-4 [VFPK]
52141
52230
+
Ser
CGA
[ENA]
¡û
>W2012029764
VFYP01000002
Alphaproteobacteria
Rhizobium sp. CL12 [VFYP]
430174
430085
-
Ser
CGA
[ENA]
¡û
>W2012375285
WMBQ01000002
Alphaproteobacteria
Hyphomicrobium sp. xq [WMBQ]
218280
218369
+
Ser
CGA
[ENA]
¡û
>W2110285115
JACXXJ020000005
Alphaproteobacteria
Agrobacterium vitis K377 [JACXXJ]
3388543
3388454
-
Ser
CGA
[ENA]
¡û
>W2110408520
JAEFBX010000001
Alphaproteobacteria
Hyphomicrobium sulfonivorans S1 [JAEFBX]
606957
607046
+
Ser
CGA
[ENA]
¡û
>W2110455077
JAEUAT010000005
Alphaproteobacteria
Rhizobium cauense HU25 [JAEUAT]
116862
116773
-
Ser
CGA
[ENA]
¡û
>W2110511460
JAFLMY010000016
Alphaproteobacteria
Agrobacterium sp. Ap1 [JAFLMY]
109270
109181
-
Ser
CGA
[ENA]
¡û
>W2110511461
JAFLMY010000017
Alphaproteobacteria
Agrobacterium sp. Ap1 [JAFLMY]
10104
10015
-
Ser
CGA
[ENA]
¡û
>W2110534888
JAGFPK010000001
Alphaproteobacteria
Ciceribacter sp. L1K22 [JAGFPK]
52507
52418
-
Ser
CGA
[ENA]
¡û
>W2110555009
JAGIPH010000009
Alphaproteobacteria
Neorhizobium galegae DS1499 [JAGIPH]
94068
94157
+
Ser
CGA
[ENA]
¡û
>W2110568391
JAGRRC010000001
Alphaproteobacteria
Ciceribacter sp. L1K23 [JAGRRC]
3908023
3908112
+
Ser
CGA
[ENA]
¡û
>W2110606358
JAHHZO010000016
Alphaproteobacteria
Rhizobium sp. CSW-27 [JAHHZO]
2363
2274
-
Ser
CGA
[ENA]
¡û
>C201023128
AP023279
Alphaproteobacteria
Agrobacterium vitis VAT03-9 [AP023279, AP023280]
1697247
1697336
+
Ser
CGA
-
¡û
>C231649935
CP123000
Alphaproteobacteria
Neorhizobium petrolearium OS53 [CP123000]
4819084
4818995
-
Ser
CGA
-
¡û
>C241068968
CP042826
Alphaproteobacteria
Rhizobium sp. WL3 [CP042826]
639386
639298
-
Ser
CGA
-
¡û
>C241135154
CP049241
Alphaproteobacteria
Allorhizobium pseudoryzae DSM 19479 [CP049241]
1579475
1579564
+
Ser
CGA
-
¡û
>C241135155
CP049241
Alphaproteobacteria
Allorhizobium pseudoryzae DSM 19479 [CP049241]
1589286
1589375
+
Ser
CGA
-
¡û
>C241173421
CP058350
Alphaproteobacteria
Peteryoungia desertarenae ADMK78 [CP058350]
1656992
1656903
-
Ser
CGA
-
¡û
>W1511588820
LBCQ01000005
Alphaproteobacteria
Aquamicrobium sp. LC103 LC103 [LBCQ]
369226
369315
+
Ser
CGA
[ENA]
¡û
>W1610649076
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
296202
296113
-
Ser
CGA
[ENA]
¡û
>W1610649481
LJIB01000025
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
24858
24947
+
Ser
CGA
[ENA]
¡û
>W1610723874
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
101736
101825
+
Ser
CGA
[ENA]
¡û
>W1610730925
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
101711
101800
+
Ser
CGA
[ENA]
¡û
>W1610744178
LMTR01000075
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
42902
42813
-
Ser
CGA
[ENA]
¡û
>W1710540099
FNWM01000002
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
169272
169183
-
Ser
CGA
[ENA]
¡û
>W1710540110
FNWM01000007
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
15306
15217
-
Ser
CGA
[ENA]
¡û
>W1710561953
FOON01000004
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
168164
168075
-
Ser
CGA
[ENA]
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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