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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264942 (64 seq.)
>C171036906
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
511778
511854
+
Arg
TCT
-
¡û
>WENV180102975
OAOZ01076715
[OAOZ] marine metagenome; ENVO:00002010
157
82
-
Arg
TCT
[ENA]
¡û
>WENV180103180
OAPA01005279
[OAPA] marine metagenome; ENVO:00002010
714
789
+
Arg
TCT
[ENA]
¡û
>WENV180209006
OBAK01004029
[OBAK] marine metagenome; ENVO.00002150
63
136
+
Arg
TCT
[ENA]
¡û
>WENV180209575
OBAL01004890
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1275
1200
-
Arg
TCT
[ENA]
¡û
>WENV180212313
OBAN01005652
[OBAN] marine metagenome; ENVO 00002150
224
299
+
Arg
TCT
[ENA]
¡û
>WENV180360490
OBNU01000201
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
5646
5721
+
Arg
TCT
[ENA]
¡û
>WENV180376435
OBOM01007987
[OBOM] marine metagenome; Seawater
554
479
-
Arg
TCT
[ENA]
¡û
>WENV180391191
OBPM01033953
[OBPM] marine metagenome; ENVO:00002010
266
193
-
Arg
TCT
[ENA]
¡û
>WENV180392997
OBPP01043615
[OBPP] marine metagenome; ENVO:00002042
379
304
-
Arg
TCT
[ENA]
¡û
>WENV180393740
OBPR01004692
[OBPR] marine metagenome; ENVO:00002042
370
295
-
Arg
TCT
[ENA]
¡û
>WENV180395533
OBPT01039720
[OBPT] marine metagenome; ENVO:00002010 seawater
522
447
-
Arg
TCT
[ENA]
¡û
>WENV180591266
OCOV01006539
[OCOV] marine metagenome; ENVO:01000301
502
429
-
Arg
TCT
[ENA]
¡û
>WENV180650244
OCSY01000452
[OCSY] marine metagenome; 30 L Plastic container
242
169
-
Arg
TCT
[ENA]
¡û
>WENV181322142
OFKP01010597
[OFKP] marine metagenome; sea ice
527
602
+
Arg
TCT
[ENA]
¡û
>WENV181323502
OFKY01002338
[OFKY] marine metagenome; sea ice
368
293
-
Arg
TCT
[ENA]
¡û
>WENV181323764
OFKZ01003585
[OFKZ] marine metagenome; sea ice
691
616
-
Arg
TCT
[ENA]
¡û
>WENV181324405
OFLE01004922
[OFLE] marine metagenome; sea ice
339
414
+
Arg
TCT
[ENA]
¡û
>WENV181324510
OFLF01000199
[OFLF] marine metagenome; melt pond
3271
3346
+
Arg
TCT
[ENA]
¡û
>WENV181368495
OFQL01011425
[OFQL] freshwater metagenome; Freshwater Lake
281
206
-
Arg
TCT
[ENA]
¡û
>WENV181370421
OFQS01010481
[OFQS] freshwater metagenome; Freshwater Lake
723
796
+
Arg
TCT
[ENA]
¡û
>WENV181370831
OFQT01017443
[OFQT] freshwater metagenome; Freshwater Lake
548
474
-
Arg
TCT
[ENA]
¡û
>WENV181393040
OFRX01035826
[OFRX] seawater metagenome; seawater
436
361
-
Arg
TCT
[ENA]
¡û
>WENV181836588
OGVJ01013271
[OGVJ] freshwater metagenome; freshwater
398
471
+
Arg
TCT
[ENA]
¡û
>WENV181839684
OGVO01006932
[OGVO] freshwater metagenome; freshwater
163
90
-
Arg
TCT
[ENA]
¡û
>WENV181839700
OGVO01007652
[OGVO] freshwater metagenome; freshwater
136
63
-
Arg
TCT
[ENA]
¡û
>WENV181843363
OGVU01010623
[OGVU] freshwater metagenome; freshwater
377
304
-
Arg
TCT
[ENA]
¡û
>WENV181855860
OGWM01003736
[OGWM] freshwater metagenome; freshwater
1098
1171
+
Arg
TCT
[ENA]
¡û
>WENV183617039
OOEE01036208
[OOEE] marine metagenome; sea ice
341
266
-
Arg
TCT
[ENA]
¡û
>WENV183617671
OOEG01039531
[OOEG] marine metagenome; sea ice
361
286
-
Arg
TCT
[ENA]
¡û
>WENV183620887
OOFT01000007
[OOFT] marine metagenome; sea ice
12594
12669
+
Arg
TCT
[ENA]
¡û
>WENV183629400
OOGP01033912
[OOGP] marine metagenome; seawater
254
329
+
Arg
TCT
[ENA]
¡û
>WENV170568407
FLMP01036980
[FLMP] seawater metagenome; seawater
387
462
+
Arg
TCT
[ENA]
¡û
>WENV170597896
FUWD010018164
[FUWD] metagenome; unknown
369
444
+
Arg
TCT
[ENA]
¡û
>WENV170605961
FUWD010576761
[FUWD] metagenome; unknown
36
109
+
Arg
TCT
[ENA]
¡û
>WENV170606193
FUWD010630743
[FUWD] metagenome; unknown
155
230
+
Arg
TCT
[ENA]
¡û
>WENV170609385
FUWD011388542
[FUWD] metagenome; unknown
104
31
-
Arg
TCT
[ENA]
¡û
>WENV170626196
FUWD013216158
[FUWD] metagenome; unknown
240
165
-
Arg
TCT
[ENA]
¡û
>WENV170627148
FUWD013231695
[FUWD] metagenome; unknown
2636
2711
+
Arg
TCT
[ENA]
¡û
>WENV170627160
FUWD013231736
[FUWD] metagenome; unknown
7083
7008
-
Arg
TCT
[ENA]
¡û
>WENV170632076
FUWD013378089
[FUWD] metagenome; unknown
34979
35054
+
Arg
TCT
[ENA]
¡û
>WENV170632126
FUWD013378560
[FUWD] metagenome; unknown
7083
7008
-
Arg
TCT
[ENA]
¡û
>WENV170949051
MEHZ011345828
[MEHZ] marine metagenome; marine surface water
4134
4061
-
Arg
TCT
[ENA]
¡û
>C191178343
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
863175
863099
-
Arg
TCT
-
¡û
>C191178382
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
838370
838296
-
Arg
TCT
-
¡û
>C191178420
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
823639
823565
-
Arg
TCT
-
¡û
>C151025273
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
563888
563963
+
Arg
TCT
[Ensembl]
¡û
>SRA1024454
SRR035084.328680
454 Sequencing (SRP001805)
96
171
+
Arg
TCT
[SRA]
>SRA1024706
SRR035084.380542
454 Sequencing (SRP001805)
238
163
-
Arg
TCT
[SRA]
>SRA1028344
SRR035086.305717
454 Sequencing (SRP001807)
303
378
+
Arg
TCT
[SRA]
>SRA1044706
SRR035092.325567
454 Sequencing (SRP001813)
328
403
+
Arg
TCT
[SRA]
>SRA1045354
SRR035093.75447
454 Sequencing (SRP001814)
252
177
-
Arg
TCT
[SRA]
>SRA1045873
SRR035093.185180
454 Sequencing (SRP001814)
114
189
+
Arg
TCT
[SRA]
>SRA1045985
SRR035093.210288
454 Sequencing (SRP001814)
225
150
-
Arg
TCT
[SRA]
>SRA1046560
SRR035093.332656
454 Sequencing (SRP001814)
153
78
-
Arg
TCT
[SRA]
>SRA1046606
SRR035093.342065
454 Sequencing (SRP001814)
436
361
-
Arg
TCT
[SRA]
>SRA1047344
SRR035093.517344
454 Sequencing (SRP001814)
239
314
+
Arg
TCT
[SRA]
>SRA1047509
SRR035093.560684
454 Sequencing (SRP001814)
62
137
+
Arg
TCT
[SRA]
>C201276013
CP054056
Actinomycetota
Aquiluna sp. 15G-AUS-rot [CP054056]
502553
502626
+
Arg
TCT
-
¡û
>W121063473
AJKR01000003
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
374498
374423
-
Arg
TCT
[ENA]
¡û
>WENV058372
AACY023326746
Marine microbial communities from Global Ocean Sampling (GOS)
979
904
-
Arg
TCT
[ENA]
>W1610625718
LIBA01000013
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
7812
7885
+
Arg
TCT
[ENA]
¡û
>WENV074602
AACY023984904
Marine microbial communities from Global Ocean Sampling (GOS)
1172
1095
-
Arg
TCT
[ENA]
>W1710756845
LIBA01000013
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
7812
7885
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK