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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.265211 (32 seq.)
>W1710991257
LPXN01000158
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
211
286
+
Trp
CCA
[ENA]
¡û
>W131217359
ATWQ01000027
Alphaproteobacteria
alpha proteobacterium SCGC AAA536-K22 [ATWQ]
20085
20010
-
Trp
CCA
[ENA]
¡û
>C171101502
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
1585972
1585897
-
Trp
CCA
-
¡û
>W131240700
BAOK01000001
Alphaproteobacteria
alpha proteobacterium Mf 1.05b.01 [BAOK]
785591
785666
+
Trp
CCA
[ENA]
¡û
>WENV180588455
OCOP01061594
[OCOP] marine metagenome; water
398
470
+
Trp
CCA
[ENA]
¡û
>WENV180589284
OCOR01022615
[OCOR] marine metagenome; ENVO:00002042
202
277
+
Trp
CCA
[ENA]
¡û
>WENV180689354
OCZA010806453
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
176
101
-
Trp
CCA
[ENA]
¡û
>W141236681
BBIO01000028
Alphaproteobacteria
Tepidicaulis marinus MA2 [BBIO]
15929
15854
-
Trp
CCA
[ENA]
¡û
>WENV170231975
CEQI01009892
[CEQI] marine metagenome genome assembly TARA_076_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
106
181
+
Trp
CCA
[ENA]
¡û
>WENV170381920
CETW01284904
[CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
647
572
-
Trp
CCA
[ENA]
¡û
>WENV170578330
FUFK010015693
[FUFK] metagenome; unknown
1755
1830
+
Trp
CCA
[ENA]
¡û
>WENV170585793
FUFK010327252
[FUFK] metagenome; unknown
266
191
-
Trp
CCA
[ENA]
¡û
>WENV170586264
FUFK010387260
[FUFK] metagenome; unknown
883
809
-
Trp
CCA
[ENA]
¡û
>WENV170587452
FUFK010493477
[FUFK] metagenome; unknown
31
106
+
Trp
CCA
[ENA]
¡û
>WENV170592628
FUFK010813960
[FUFK] metagenome; unknown
84
9
-
Trp
CCA
[ENA]
¡û
>WENV170866483
MDTB01133680
[MDTB] marine metagenome; seawater
5663
5735
+
Trp
CCA
[ENA]
¡û
>PL191000275
CP022363
Alphaproteobacteria
Azospirillum sp. TSH58 plasmid:TSH58_p03 (CP022363)
613601
613526
-
Trp
CCA
[ENA]
¡û
>W1810525361
QCNM01000027
Alphaproteobacteria
SAR116 cluster bacterium AG-426-A06 [QCNM]
10486
10561
+
Trp
CCA
[ENA]
¡û
>W2010427199
FZLR01000013
Alphaproteobacteria
Rhodospirillaceae bacterium Spongia-Bin9 [FZLR]
217
292
+
Trp
CCA
[ENA]
¡û
>W2010718083
JACHYN010000004
Alphaproteobacteria
Azospirillum sp. OGB3 [JACHYN]
225897
225972
+
Trp
CCA
[ENA]
¡û
>W2010772805
LGQX01000100
Alphaproteobacteria
Azospirillum sp. TSH100 [LGQX]
271
346
+
Trp
CCA
[ENA]
¡û
>W2010773017
LGRK01000056
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
140254
140179
-
Trp
CCA
[ENA]
¡û
>W2110201030
JACCJY010000008
Alphaproteobacteria
Azospirillum sp. W712 [JACCJY]
150588
150513
-
Trp
CCA
[ENA]
¡û
>C241034275
CP030265
Alphaproteobacteria
Skermanella pratensis W17 [CP030265]
4035158
4035083
-
Trp
CCA
-
¡û
>C241250210
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
3040987
3040912
-
Trp
CCA
-
¡û
>C121016576
FQ311868
Alphaproteobacteria
Azospirillum lipoferum 4B [FQ311868]
418092
418167
+
Trp
CCA
[Ensembl]
¡û
>C161085677
CP015285
Alphaproteobacteria
Azospirillum humicireducens SgZ-5 [CP015285]
395844
395919
+
Trp
CCA
[Ensembl]
¡û
>WENV064417
AACY023542436
Marine microbial communities from Global Ocean Sampling (GOS)
276
353
+
Trp
CCA
[ENA]
>WENV065584
AACY023601886
Marine microbial communities from Global Ocean Sampling (GOS)
676
601
-
Trp
CCA
[ENA]
>WENV071729
AACY023858432
Marine microbial communities from Global Ocean Sampling (GOS)
880
957
+
Trp
CCA
[ENA]
>WENV073888
AACY023944108
Marine microbial communities from Global Ocean Sampling (GOS)
105
182
+
Trp
CCA
[ENA]
>W1710626710
JPIR01000065
Alphaproteobacteria
Azospirillum brasilense [JPIR]
28924
28849
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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