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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26549 (78 seq.)
>W1710863839
LMFL01000008
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
133712
133623
-
Ser
CGA
[ENA]
¡û
>W1710863858
LMFL01000024
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
16812
16723
-
Ser
CGA
[ENA]
¡û
>W1710865559
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
117308
117219
-
Ser
CGA
[ENA]
¡û
>W1710868110
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2198186
2198097
-
Ser
CGA
[ENA]
¡û
>W1710870354
LMKL01000001
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
376590
376501
-
Ser
CGA
[ENA]
¡û
>W1710870846
LMKV01000018
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
18532
18443
-
Ser
CGA
[ENA]
¡û
>W1710876455
LMPG01000001
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
755614
755703
+
Ser
CGA
[ENA]
¡û
>W1710878060
LMQP01000004
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
41115
41026
-
Ser
CGA
[ENA]
¡û
>W1710879499
LMRS01000034
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
176007
175918
-
Ser
CGA
[ENA]
¡û
>W1711408005
MGLN01000096
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
11193
11282
+
Ser
CGA
[ENA]
¡û
>C171095043
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
227778
227867
+
Ser
CGA
-
¡û
>W131098620
AORY01000004
Alphaproteobacteria
Sphingomonas sp. Mn802worker [AORY]
665494
665583
+
Ser
CGA
[ENA]
¡û
>WENV181223390
OFDC01010730
[OFDC] hot springs metagenome; Water
2352
2441
+
Ser
CGA
[ENA]
¡û
>WENV170712437
LNFM01013341
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5
94
+
Ser
CGA
[ENA]
¡û
>WENV170714312
LNFM01067142
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2128
2039
-
Ser
CGA
[ENA]
¡û
>C181108612
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
169916
170005
+
Ser
CGA
-
¡û
>C191002749
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
3245815
3245904
+
Ser
CGA
-
¡û
>C191154772
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
2464591
2464502
-
Ser
CGA
-
¡û
>W141779846
JOOE01000001
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
1062808
1062719
-
Ser
CGA
[ENA]
¡û
>W1911688173
QLJH01000021
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt15_0812 [QLJH]
55000
55089
+
Ser
CGA
[ENA]
¡û
>W1810090352
PGFU01000008
Alphaproteobacteria
Sphingomonas carotinifaciens B093034 [PGFU]
119147
119058
-
Ser
CGA
[ENA]
¡û
>W1810475055
QAIS01000294
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
12504
12415
-
Ser
CGA
[ENA]
¡û
>SRA1014856
SRR023845.346407
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
181
92
-
Ser
CGA
[SRA]
>SRA1015131
SRR023845.470964
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
141
52
-
Ser
CGA
[SRA]
>SRA1015413
SRR023846.49801
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
242
153
-
Ser
CGA
[SRA]
>W2010302869
CABVLH010000005
Alphaproteobacteria
Sphingomonas sp. EC-HK361 [CABVLH]
295834
295745
-
Ser
CGA
[ENA]
¡û
>W2010370468
CAHJWX010000035
Alphaproteobacteria
Sphingomonas bacterium [CAHJWX]
1784
1695
-
Ser
CGA
[ENA]
¡û
>W2010633635
JABTYI010000005
Alphaproteobacteria
Brevundimonas vesicularis USM1 [JABTYI]
120273
120362
+
Ser
CGA
[ENA]
¡û
>W2010635757
JABULH010000002
Alphaproteobacteria
Sphingomonas sp. HHU CXW [JABULH]
676210
676299
+
Ser
CGA
[ENA]
¡û
>W2010726287
JACIEV010000006
Alphaproteobacteria
Sphingomonas jinjuensis YC6723 [JACIEV]
241643
241554
-
Ser
CGA
[ENA]
¡û
>W2010726404
JACIEY010000001
Alphaproteobacteria
Sphingomonas carotinifaciens DSM 27347 [JACIEY]
173109
173020
-
Ser
CGA
[ENA]
¡û
>W2010732001
JACIJN010000002
Alphaproteobacteria
Sphingomonas endophytica DSM 101535 [JACIJN]
188702
188791
+
Ser
CGA
[ENA]
¡û
>W2011269602
QLJH01000021
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt15_0812 [QLJH]
55000
55089
+
Ser
CGA
[ENA]
¡û
>W2011407548
RCZC01000002
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
1336056
1335967
-
Ser
CGA
[ENA]
¡û
>W2011685880
SRXT01000006
Alphaproteobacteria
Sphingomonas gei ZFGT-11 [SRXT]
42396
42485
+
Ser
CGA
[ENA]
¡û
>W2011954321
UXHF01000010
Alphaproteobacteria
Brevundimonas mediterranea [UXHF]
36159
36248
+
Ser
CGA
[ENA]
¡û
>W2012208286
VYPZ01000002
Alphaproteobacteria
Sphingobium limneticum DSM 25076 [VYPZ]
331779
331690
-
Ser
CGA
[ENA]
¡û
>W2012208380
VYQA01000012
Alphaproteobacteria
Sphingobium paulinellae KACC 19283 [VYQA]
38252
38341
+
Ser
CGA
[ENA]
¡û
>W2012208434
VYQB01000012
Alphaproteobacteria
Sphingobium algicola KACC 19284 [VYQB]
38251
38340
+
Ser
CGA
[ENA]
¡û
>W2012432546
WSUT01000005
Alphaproteobacteria
Sphingomonas carotinifaciens DSM 27347 [WSUT]
1690783
1690694
-
Ser
CGA
[ENA]
¡û
>W2110020687
BMDW01000015
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
51718
51807
+
Ser
CGA
[ENA]
¡û
>W2110026325
BMIH01000001
Alphaproteobacteria
Sphingomonas metalli CGMCC 1.15330 [BMIH]
529569
529658
+
Ser
CGA
[ENA]
¡û
>W2110051915
BNAQ01000001
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
1249016
1248927
-
Ser
CGA
[ENA]
¡û
>W2110103945
CAJFZW010000030
Alphaproteobacteria
Brevundimonas aurantiaca Marseille-P7625 [CAJFZW]
8261
8350
+
Ser
CGA
[ENA]
¡û
>W2110104045
CAJFZY010000004
Alphaproteobacteria
Brevundimonas aurantiaca Marseille-P5761 [CAJFZY]
22178
22267
+
Ser
CGA
[ENA]
¡û
>W2110290614
JACYUG010000006
Alphaproteobacteria
Sphingomonas sp. CFBP 8760 CFBP8760 [JACYUG]
212805
212716
-
Ser
CGA
[ENA]
¡û
>W2110427253
JAELXS010000003
Alphaproteobacteria
Sphingomonas sp. BT553 [JAELXS]
264189
264278
+
Ser
CGA
[ENA]
¡û
>W2110484177
JAFEMC010000002
Alphaproteobacteria
Sphingomonas sp. BT552 [JAFEMC]
589597
589686
+
Ser
CGA
[ENA]
¡û
>W2110569904
JAGSNX010000002
Alphaproteobacteria
Microvirga sp. SRT01 [JAGSNX]
589597
589686
+
Ser
CGA
[ENA]
¡û
>W2110663373
JAHXZM010000002
Alphaproteobacteria
Sphingomonas sp. RHCKR47 [JAHXZM]
732601
732690
+
Ser
CGA
[ENA]
¡û
>C211140870
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
1421969
1422058
+
Ser
CGA
-
¡û
>C211140912
CP061038
Alphaproteobacteria
Sphingomonas alpina DSM 22537 [CP061038]
1074773
1074862
+
Ser
CGA
-
¡û
>W10109839
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
86579
86668
+
Ser
CGA
[ENA]
¡û
>C231129949
CP073063
Alphaproteobacteria
Brevundimonas diminuta KX-1 [CP073063]
1565433
1565344
-
Ser
CGA
-
¡û
>C231441502
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
1668399
1668310
-
Ser
CGA
-
¡û
>C231536483
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
1310677
1310588
-
Ser
CGA
-
¡û
>C231536529
CP110679
Alphaproteobacteria
Sphingomonas sp. S6-11 [CP110679]
1211573
1211484
-
Ser
CGA
-
¡û
>C231566421
CP115464
Alphaproteobacteria
Brevundimonas sp. NIBR10 [CP115464]
2953251
2953340
+
Ser
CGA
-
¡û
>C241006593
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
1583504
1583415
-
Ser
CGA
-
¡û
>C241131747
CP048817
Alphaproteobacteria
Sphingomonas sp. So64.6b [CP048817]
736540
736629
+
Ser
CGA
-
¡û
>C10102206
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2419177
2419266
+
Ser
CGA
[Ensembl]
¡û
>W2310025937
BSOY01000031
Alphaproteobacteria
Brevundimonas denitrificans NBRC 110107 [BSOY]
2242
2331
+
Ser
CGA
[ENA]
¡û
>W11112276
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
86579
86668
+
Ser
CGA
[ENA]
¡û
>W1511352558
JROH01000009
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
19431
19342
-
Ser
CGA
[ENA]
¡û
>C161089103
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1519217
1519306
+
Ser
CGA
[Ensembl]
¡û
>W121033277
AHIS01000063
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
19240
19329
+
Ser
CGA
[ENA]
¡û
>W1610726185
LMFL01000008
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
133712
133623
-
Ser
CGA
[ENA]
¡û
>W1610726204
LMFL01000024
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
16812
16723
-
Ser
CGA
[ENA]
¡û
>W1610727905
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
117308
117219
-
Ser
CGA
[ENA]
¡û
>W1610730456
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2198186
2198097
-
Ser
CGA
[ENA]
¡û
>W1610732700
LMKL01000001
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
376590
376501
-
Ser
CGA
[ENA]
¡û
>W1610733192
LMKV01000018
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
18532
18443
-
Ser
CGA
[ENA]
¡û
>W1610738801
LMPG01000001
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
755614
755703
+
Ser
CGA
[ENA]
¡û
>W1610740406
LMQP01000004
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
41115
41026
-
Ser
CGA
[ENA]
¡û
>W1610741845
LMRS01000034
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
176007
175918
-
Ser
CGA
[ENA]
¡û
>W1710514931
FNBI01000002
Alphaproteobacteria
Sphingomonas carotinifaciens S7-754 [FNBI]
535671
535760
+
Ser
CGA
[ENA]
¡û
>W1710543464
FNZZ01000003
Alphaproteobacteria
Sphingomonas palmae JS21-1 [FNZZ]
456424
456513
+
Ser
CGA
[ENA]
¡û
>W1710573581
FOXP01000001
Alphaproteobacteria
Sphingomonas rubra [FOXP]
5715
5626
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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