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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.265591 (55 seq.)
>W1710819511
LKPX01000003
Thermodesulfobacteriota
Desulfobacteraceae bacterium RAAP-1 [LKPX]
40848
40773
-
Val
TAC
[ENA]
¡û
>W1711317734
MAXQ01000384
Thermodesulfobacteriota
Desulfobulbaceae bacterium C00003063 [MAXQ]
5414
5489
+
Val
TAC
[ENA]
¡û
>W131208436
ATHJ01000107
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
24039
24114
+
Val
TAC
[ENA]
¡û
>W1711585426
MNZR01000246
Thermodesulfobacteriota
Syntrophobacteraceae bacterium CG2_30_61_12 [MNZR]
7205
7130
-
Val
TAC
[ENA]
¡û
>C171038062
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
4430763
4430838
+
Val
TAC
-
¡û
>C171100868
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
4431341
4431416
+
Val
TAC
-
¡û
>w022487
AAWN01000057
Thermodesulfobacteriota
Desulfosudis oleivorans oleovorans Hxd3 [AAWN]
16309
16237
-
Val
TAC
[ENA]
¡û
>WENV180249708
OBEQ010223617
[OBEQ] groundwater metagenome; groundwater
417
343
-
Val
TAC
[ENA]
¡û
>W141092621
AVAG01000009
Thermodesulfobacteriota
Desulfonauticus sp. A7A [AVAG]
62260
62335
+
Val
TAC
[ENA]
¡û
>WENV181207683
OFAZ01014509
[OFAZ] metagenome; hydrothermal vent
285
210
-
Val
TAC
[ENA]
¡û
>C08004133
CP000859
Thermodesulfobacteriota
Desulfosudis oleivorans Hxd3 [CP000859]
3247831
3247906
+
Val
TAC
[Ensembl]
¡û
>WENV183705411
PDWI01001512
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19232
19307
+
Val
TAC
[ENA]
¡û
>WENV183706102
PDWI01003101
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
571
496
-
Val
TAC
[ENA]
¡û
>WENV183706200
PDWI01003414
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
23
-
Val
TAC
[ENA]
¡û
>WENV183707361
PDWI01008043
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9209
9134
-
Val
TAC
[ENA]
¡û
>WENV183708136
PDWI01013276
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
212
137
-
Val
TAC
[ENA]
¡û
>WENV183712255
PDWI01093668
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
23
-
Val
TAC
[ENA]
¡û
>WENV183716606
PDWJ01000068
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
54047
54122
+
Val
TAC
[ENA]
¡û
>WENV183718662
PDWJ01005696
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
98
23
-
Val
TAC
[ENA]
¡û
>WENV183722391
PDWJ01124647
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
13
88
+
Val
TAC
[ENA]
¡û
>WENV170013940
AVFP01000159
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
4173
4248
+
Val
TAC
[ENA]
¡û
>WENV170404320
CEUF01280277
[CEUF] marine metagenome genome assembly TARA_138_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
78
2
-
Val
TAC
[ENA]
¡û
>WENV170404596
CEUG01015577
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9062
8986
-
Val
TAC
[ENA]
¡û
>WENV170675928
LDZQ01001438
[LDZQ] terrestrial metagenome; oil reservoir sample I2
11105
11030
-
Val
TAC
[ENA]
¡û
>WENV170779205
LZQN01000013
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
55260
55185
-
Val
TAC
[ENA]
¡û
>WENV170779369
LZQN01003508
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
219
144
-
Val
TAC
[ENA]
¡û
>WENV170878311
MDTC01073883
[MDTC] marine metagenome; seawater
110701
110625
-
Val
TAC
[ENA]
¡û
>WENV170890740
MDTD01014326
[MDTD] marine metagenome; seawater
30258
30182
-
Val
TAC
[ENA]
¡û
>W09126285
ACJN01000007
Thermodesulfobacteriota
Desulfonatronospira thiodismutans ASO3-1 [ACJN]
986
911
-
Val
TAC
[ENA]
¡û
>W1910067296
BEXT01000001
Thermodesulfobacteriota
Desulfonema ishimotonii Tokyo 01 [BEXT]
5805166
5805241
+
Val
TAC
[ENA]
¡û
>W2010079523
BEXT01000001
Thermodesulfobacteriota
Desulfonema ishimotonii Tokyo 01 [BEXT]
5805166
5805241
+
Val
TAC
[ENA]
¡û
>W2011702099
SWCK01000044
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
32088
32163
+
Val
TAC
[ENA]
¡û
>W2011702101
SWCK01000044
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
32680
32755
+
Val
TAC
[ENA]
¡û
>W2011702112
SWCK01000170
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
170
245
+
Val
TAC
[ENA]
¡û
>W2011702113
SWCK01000171
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
170
245
+
Val
TAC
[ENA]
¡û
>W2011702115
SWCK01000196
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
212
137
-
Val
TAC
[ENA]
¡û
>W2012331795
WIAA01000011
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [WIAA]
159281
159206
-
Val
TAC
[ENA]
¡û
>W2012331797
WIAA01000011
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [WIAA]
158926
158851
-
Val
TAC
[ENA]
¡û
>W2110494734
JAFFQE010000001
Thermodesulfobacteriota
Desulfopila inferna DSM 19738 [JAFFQE]
491578
491503
-
Val
TAC
[ENA]
¡û
>W2110575850
JAGUQP010000022
Thermodesulfobacteriota
Desulfohalobiaceae bacterium Ax17 [JAGUQP]
13909
13834
-
Val
TAC
[ENA]
¡û
>C241146513
CP050699
Thermodesulfobacteriota
Desulfosediminicola ganghwensis IMCC35004 [CP050699]
3817444
3817369
-
Val
TAC
-
¡û
>C241146515
CP050699
Thermodesulfobacteriota
Desulfosediminicola ganghwensis IMCC35004 [CP050699]
3816852
3816777
-
Val
TAC
-
¡û
>C241146517
CP050699
Thermodesulfobacteriota
Desulfosediminicola ganghwensis IMCC35004 [CP050699]
3816491
3816416
-
Val
TAC
-
¡û
>C241146519
CP050699
Thermodesulfobacteriota
Desulfosediminicola ganghwensis IMCC35004 [CP050699]
3816130
3816055
-
Val
TAC
-
¡û
>C241146552
CP050700
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [CP050700]
1869833
1869908
+
Val
TAC
-
¡û
>C241146554
CP050700
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [CP050700]
1870188
1870263
+
Val
TAC
-
¡û
>W1610612353
LGER01000004
Thermodesulfobacteriota
Desulfonauticus sp. 38_4375 [LGER]
11105
11030
-
Val
TAC
[ENA]
¡û
>W1610683473
LKPX01000003
Thermodesulfobacteriota
Desulfobacteraceae bacterium RAAP-1 [LKPX]
40848
40773
-
Val
TAC
[ENA]
¡û
>WENV079112
AASZ01000892
Olavius algarvensis microbiome from Mediterranean sea
3865
3940
+
Val
TAC
[ENA]
>W1710524169
FNIN01000001
Thermodesulfobacteriota
Desulfonauticus submarinus [FNIN]
73572
73497
-
Val
TAC
[ENA]
¡û
>W1710525178
FNJI01000010
Thermodesulfobacteriota
Desulforhopalus singaporensis [FNJI]
131798
131723
-
Val
TAC
[ENA]
¡û
>W1710583773
FQVB01000020
Thermodesulfobacteriota
Desulfacinum infernum DSM 9756 [FQVB]
22823
22898
+
Val
TAC
[ENA]
¡û
>W1710600563
FUWN01000034
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
4720
4645
-
Val
TAC
[ENA]
¡û
>W1710605650
FWXF01000003
Thermodesulfobacteriota
Desulfacinum hydrothermale DSM 13146 [FWXF]
20859
20934
+
Val
TAC
[ENA]
¡û
>W1710733819
LGER01000004
Thermodesulfobacteriota
Desulfonauticus sp. 38_4375 [LGER]
11105
11030
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK