This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.265643 (149 seq.)
>W1712039623
NFJU01000140
Bacillota
Anaeromassilibacillus sp. An200 [NFJU]
82
7
-
Asn
GTT
[ENA]
¡û
>W1712039624
NFJU01000147
Bacillota
Anaeromassilibacillus sp. An200 [NFJU]
518
443
-
Asn
GTT
[ENA]
¡û
>W1712040542
NFKK01000023
Bacillota
Butyricicoccus pullicaecorum [NFKK]
79
154
+
Asn
GTT
[ENA]
¡û
>WENV180154141
OAUS01020706
[OAUS] human gut metagenome; faeces
121
46
-
Asn
GTT
[ENA]
¡û
>WENV180172566
OAVX01006932
[OAVX] human gut metagenome; faeces
761
836
+
Asn
GTT
[ENA]
¡û
>WENV180301511
OBJE01042107
[OBJE] human gut metagenome; faeces
166
91
-
Asn
GTT
[ENA]
¡û
>WENV180303479
OBJF01046705
[OBJF] human gut metagenome; feces
162
87
-
Asn
GTT
[ENA]
¡û
>WENV180469141
OBYM01000618
[OBYM] human gut metagenome; faeces
412
487
+
Asn
GTT
[ENA]
¡û
>WENV180469805
OBYM01016718
[OBYM] human gut metagenome; faeces
774
849
+
Asn
GTT
[ENA]
¡û
>WENV180568322
OCLM01087754
[OCLM] human gut metagenome; human gut
342
267
-
Asn
GTT
[ENA]
¡û
>WENV180700112
ODDM01109702
[ODDM] human metagenome; G_DNA_Stool
27
102
+
Asn
GTT
[ENA]
¡û
>WENV180704246
ODEI01028800
[ODEI] human metagenome; G_DNA_Stool
312
237
-
Asn
GTT
[ENA]
¡û
>WENV180713775
ODFV01014245
[ODFV] human metagenome; G_DNA_Stool
768
843
+
Asn
GTT
[ENA]
¡û
>WENV180785968
ODIR01056804
[ODIR] human metagenome; G_DNA_Stool
659
734
+
Asn
GTT
[ENA]
¡û
>WENV180799578
ODJC01011430
[ODJC] human metagenome; G_DNA_Stool
91
166
+
Asn
GTT
[ENA]
¡û
>WENV180829248
ODKA01092231
[ODKA] human metagenome; G_DNA_Stool
263
338
+
Asn
GTT
[ENA]
¡û
>WENV180838189
ODKG01040309
[ODKG] human metagenome; G_DNA_Stool
72
-1
-
Asn
GTT
[ENA]
¡û
>WENV180871161
ODLN01022057
[ODLN] human metagenome; G_DNA_Stool
680
755
+
Asn
GTT
[ENA]
¡û
>W141088590
AUVG01000049
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
139
214
+
Asn
GTT
[ENA]
¡û
>WENV180957425
ODUK01043108
[ODUK] human metagenome; G_DNA_Stool
84
9
-
Asn
GTT
[ENA]
¡û
>WENV180997833
ODVS01139061
[ODVS] human metagenome; G_DNA_Stool
184
259
+
Asn
GTT
[ENA]
¡û
>WENV181005473
ODVY01018430
[ODVY] human metagenome; G_DNA_Stool
113
38
-
Asn
GTT
[ENA]
¡û
>WENV181062106
ODYN01057842
[ODYN] human metagenome; G_DNA_Stool
83
158
+
Asn
GTT
[ENA]
¡û
>WENV181094100
OEBW01111222
[OEBW] human metagenome; G_DNA_Stool
144
216
+
Asn
GTT
[ENA]
¡û
>WENV181111289
OEEK01049648
[OEEK] human metagenome; G_DNA_Stool
678
754
+
Asn
GTT
[ENA]
¡û
>WENV181132944
OEGE01031880
[OEGE] human metagenome; G_DNA_Stool
636
711
+
Asn
GTT
[ENA]
¡û
>WENV181154591
OEIC01006976
[OEIC] human metagenome; G_DNA_Stool
226
301
+
Asn
GTT
[ENA]
¡û
>WENV181175138
OEJP01059798
[OEJP] human metagenome; G_DNA_Stool
214
289
+
Asn
GTT
[ENA]
¡û
>WENV181195042
OEQS01000425
[OEQS] metagenome; Caecal content
4387
4312
-
Asn
GTT
[ENA]
¡û
>WENV181196043
OEQW01000029
[OEQW] metagenome; Caecal content
4520
4445
-
Asn
GTT
[ENA]
¡û
>WENV181197419
OERB01000766
[OERB] metagenome; Caecal content
3211
3136
-
Asn
GTT
[ENA]
¡û
>WENV181197943
OERC01010067
[OERC] metagenome; Caecal content
567
492
-
Asn
GTT
[ENA]
¡û
>WENV181198518
OERE01006539
[OERE] metagenome; Caecal content
694
619
-
Asn
GTT
[ENA]
¡û
>WENV181203613
OERW01005193
[OERW] metagenome; Caecal content
690
765
+
Asn
GTT
[ENA]
¡û
>WENV181204686
OERZ01007465
[OERZ] metagenome; Caecal content
119
194
+
Asn
GTT
[ENA]
¡û
>WENV181245289
OFFI01062879
[OFFI] mouse gut metagenome; faeces
89
14
-
Asn
GTT
[ENA]
¡û
>WENV181340309
OFMG01068742
[OFMG] human gut metagenome; human gut
164
89
-
Asn
GTT
[ENA]
¡û
>WENV181343816
OFMJ01012784
[OFMJ] human gut metagenome; human gut
1791
1716
-
Asn
GTT
[ENA]
¡û
>WENV181344681
OFMK01002321
[OFMK] human gut metagenome; human gut
4417
4342
-
Asn
GTT
[ENA]
¡û
>WENV181421522
OGCN01078097
[OGCN] human gut metagenome; human gut
172
97
-
Asn
GTT
[ENA]
¡û
>WENV181436650
OGDF01024831
[OGDF] human gut metagenome; human gut
723
798
+
Asn
GTT
[ENA]
¡û
>WENV181444657
OGDR01007800
[OGDR] metagenome; Human gut stool
710
784
+
Asn
GTT
[ENA]
¡û
>WENV181526907
OGHJ01079946
[OGHJ] metagenome; Human gut stool
115
190
+
Asn
GTT
[ENA]
¡û
>WENV181580349
OGJZ01043672
[OGJZ] metagenome; Human gut stool
557
482
-
Asn
GTT
[ENA]
¡û
>WENV181688402
OGOX01042245
[OGOX] human gut metagenome; faeces
42
117
+
Asn
GTT
[ENA]
¡û
>WENV181732489
OGQD01044471
[OGQD] human gut metagenome; faeces
314
389
+
Asn
GTT
[ENA]
¡û
>WENV181747471
OGQN01037483
[OGQN] human gut metagenome; faeces
707
782
+
Asn
GTT
[ENA]
¡û
>WENV181761769
OGQW01006784
[OGQW] human gut metagenome; faeces
149
224
+
Asn
GTT
[ENA]
¡û
>WENV181859953
OGWQ01028518
[OGWQ] human gut metagenome; faeces
175
100
-
Asn
GTT
[ENA]
¡û
>WENV181874561
OGXA01035259
[OGXA] human gut metagenome; faeces
423
348
-
Asn
GTT
[ENA]
¡û
>WENV181894227
OGXQ01043474
[OGXQ] human gut metagenome; faeces
243
318
+
Asn
GTT
[ENA]
¡û
>WENV181913758
OGYE01024653
[OGYE] human gut metagenome; faeces
1581
1656
+
Asn
GTT
[ENA]
¡û
>WENV181918875
OGYH01042922
[OGYH] human gut metagenome; faeces
545
470
-
Asn
GTT
[ENA]
¡û
>WENV181938811
OGYW01053406
[OGYW] human gut metagenome; faeces
123
48
-
Asn
GTT
[ENA]
¡û
>WENV181949994
OGZF01042955
[OGZF] human gut metagenome; faeces
607
532
-
Asn
GTT
[ENA]
¡û
>WENV181953905
OGZI01053744
[OGZI] human gut metagenome; faeces
240
315
+
Asn
GTT
[ENA]
¡û
>WENV181980538
OHAF01050631
[OHAF] human gut metagenome; faeces
755
680
-
Asn
GTT
[ENA]
¡û
>WENV181987209
OHAM01029899
[OHAM] human gut metagenome; faeces
774
849
+
Asn
GTT
[ENA]
¡û
>WENV182001178
OHAY01002368
[OHAY] human gut metagenome; faeces
268
343
+
Asn
GTT
[ENA]
¡û
>WENV182009937
OHBJ01085736
[OHBJ] human gut metagenome; faeces
271
346
+
Asn
GTT
[ENA]
¡û
>WENV182127523
OHJU01041551
[OHJU] human gut metagenome; feces
675
600
-
Asn
GTT
[ENA]
¡û
>WENV182201760
OHPM01041675
[OHPM] human gut metagenome; feces
164
239
+
Asn
GTT
[ENA]
¡û
>WENV182207817
OHPW01060283
[OHPW] human gut metagenome; feces
416
341
-
Asn
GTT
[ENA]
¡û
>WENV182230922
OHRL01049952
[OHRL] human gut metagenome; feces
561
486
-
Asn
GTT
[ENA]
¡û
>WENV182512796
OIWL01023289
[OIWL] human gut metagenome; faeces
730
805
+
Asn
GTT
[ENA]
¡û
>WENV182535744
OIXG01101924
[OIXG] human gut metagenome; faeces
72
-1
-
Asn
GTT
[ENA]
¡û
>WENV182632608
OJKW01100708
[OJKW] metagenome; faeces
228
153
-
Asn
GTT
[ENA]
¡û
>WENV182664847
OJMP01025747
[OJMP] human gut metagenome; feces
810
885
+
Asn
GTT
[ENA]
¡û
>WENV182692075
OJOF01011987
[OJOF] human gut metagenome; human gut
637
562
-
Asn
GTT
[ENA]
¡û
>WENV182720492
OJPN01016042
[OJPN] human gut metagenome; stool sample
1664
1589
-
Asn
GTT
[ENA]
¡û
>WENV182741414
OJQM01030345
[OJQM] human gut metagenome; stool sample
139
64
-
Asn
GTT
[ENA]
¡û
>WENV182768570
OJRV01020401
[OJRV] human gut metagenome; human gut
1150
1075
-
Asn
GTT
[ENA]
¡û
>WENV182771716
OJRX01026250
[OJRX] human gut metagenome; human gut
638
563
-
Asn
GTT
[ENA]
¡û
>WENV182772823
OJRY01009783
[OJRY] human gut metagenome; human gut
717
792
+
Asn
GTT
[ENA]
¡û
>WENV182774214
OJRZ01038300
[OJRZ] human gut metagenome; human gut
682
757
+
Asn
GTT
[ENA]
¡û
>WENV182776448
OJSB01015289
[OJSB] human gut metagenome; human gut
717
792
+
Asn
GTT
[ENA]
¡û
>WENV182781961
OJSE01021278
[OJSE] human gut metagenome; human gut
633
708
+
Asn
GTT
[ENA]
¡û
>WENV182783190
OJSF01020691
[OJSF] human gut metagenome; human gut
372
297
-
Asn
GTT
[ENA]
¡û
>WENV182785254
OJSH01011410
[OJSH] human gut metagenome; human gut
962
887
-
Asn
GTT
[ENA]
¡û
>WENV182788160
OJSK01011223
[OJSK] human gut metagenome; human gut
1258
1183
-
Asn
GTT
[ENA]
¡û
>WENV182789458
OJSL01024520
[OJSL] human gut metagenome; human gut
323
248
-
Asn
GTT
[ENA]
¡û
>WENV182790705
OJSM01058401
[OJSM] human gut metagenome; human gut
453
528
+
Asn
GTT
[ENA]
¡û
>WENV182794738
OJSP01035637
[OJSP] human gut metagenome; human gut
681
756
+
Asn
GTT
[ENA]
¡û
>WENV182802581
OJUG01020195
[OJUG] human gut metagenome; human gut
884
959
+
Asn
GTT
[ENA]
¡û
>WENV182867461
OKRR01029631
[OKRR] human gut metagenome; faeces
182
107
-
Asn
GTT
[ENA]
¡û
>WENV182881783
OKSA01035267
[OKSA] human gut metagenome; faeces
1149
1224
+
Asn
GTT
[ENA]
¡û
>WENV182888092
OKSD01056988
[OKSD] human gut metagenome; faeces
678
753
+
Asn
GTT
[ENA]
¡û
>WENV183023981
OLFS01025799
[OLFS] human gut metagenome; faeces
226
151
-
Asn
GTT
[ENA]
¡û
>WENV183030196
OLFW01047195
[OLFW] human gut metagenome; faeces
429
504
+
Asn
GTT
[ENA]
¡û
>WENV183047411
OLGF01005089
[OLGF] human gut metagenome; faeces
765
840
+
Asn
GTT
[ENA]
¡û
>WENV183053442
OLGL01014746
[OLGL] human gut metagenome; faeces
1175
1100
-
Asn
GTT
[ENA]
¡û
>WENV183111697
OLNO01046397
[OLNO] human gut metagenome; faeces
384
459
+
Asn
GTT
[ENA]
¡û
>WENV183116177
OLNQ01065168
[OLNQ] human gut metagenome; faeces
509
434
-
Asn
GTT
[ENA]
¡û
>WENV183138895
OLOH01035607
[OLOH] human gut metagenome; faeces
442
367
-
Asn
GTT
[ENA]
¡û
>WENV183173640
OLPD01027709
[OLPD] human gut metagenome; faeces
498
423
-
Asn
GTT
[ENA]
¡û
>WENV183185541
OLPN01012938
[OLPN] human gut metagenome; faeces
2825
2750
-
Asn
GTT
[ENA]
¡û
>WENV183225419
OLQN01076233
[OLQN] human gut metagenome; faeces
194
119
-
Asn
GTT
[ENA]
¡û
>WENV183256451
OLRK01037234
[OLRK] human gut metagenome; faeces
735
810
+
Asn
GTT
[ENA]
¡û
>WENV183271185
OLRV01076151
[OLRV] human gut metagenome; faeces
231
306
+
Asn
GTT
[ENA]
¡û
>WENV183290029
OLSG01046587
[OLSG] human gut metagenome; faeces
876
801
-
Asn
GTT
[ENA]
¡û
>WENV183295613
OLSL01002203
[OLSL] human gut metagenome; faeces
63
138
+
Asn
GTT
[ENA]
¡û
>WENV183404551
OLZW01039556
[OLZW] human gut metagenome; feces
644
719
+
Asn
GTT
[ENA]
¡û
>WENV183488454
OMFY01039912
[OMFY] human gut metagenome; feces
433
508
+
Asn
GTT
[ENA]
¡û
>WENV183497826
OMGN01048302
[OMGN] human gut metagenome; feces
35
110
+
Asn
GTT
[ENA]
¡û
>WENV183569393
OOCB01038230
[OOCB] human gut metagenome; human gut
488
413
-
Asn
GTT
[ENA]
¡û
>WENV183581340
OOCN01021075
[OOCN] human gut metagenome; human gut
611
686
+
Asn
GTT
[ENA]
¡û
>WENV183602291
OODJ01031102
[OODJ] human gut metagenome; human gut
851
776
-
Asn
GTT
[ENA]
¡û
>WENV183604642
OODL01021465
[OODL] human gut metagenome; human gut
1359
1431
+
Asn
GTT
[ENA]
¡û
>WENV183776123
PPYF01083100
[PPYF] human gut metagenome; stool from patient with Crohn's disease
671
596
-
Asn
GTT
[ENA]
¡û
>WENV170027128
CDTY01019407
[CDTY] gut metagenome; human stools
285
210
-
Asn
GTT
[ENA]
¡û
>WENV170098701
CEAN01013967
[CEAN] gut metagenome; human stools
133
58
-
Asn
GTT
[ENA]
¡û
>WENV170638007
JFBN01393683
[JFBN] chicken gut metagenome; ceca of Broiler chicken
147
72
-
Asn
GTT
[ENA]
¡û
>WENV170638099
JFBN01429476
[JFBN] chicken gut metagenome; ceca of Broiler chicken
218
143
-
Asn
GTT
[ENA]
¡û
>WENV170638392
JFBN01470436
[JFBN] chicken gut metagenome; ceca of Broiler chicken
76
1
-
Asn
GTT
[ENA]
¡û
>W1910441455
FWEL01000014
Bacillota
Pseudoflavonifractor sp. Marseille-P3106 [FWEL]
152777
152702
-
Asn
GTT
[ENA]
¡û
>W1810697955
QLYR01000003
Bacillota
Hydrogeniiclostridium mannosilyticum ASD2818 [QLYR]
237658
237583
-
Asn
GTT
[ENA]
¡û
>W1810697976
QLYR01000010
Bacillota
Hydrogeniiclostridium mannosilyticum ASD2818 [QLYR]
102181
102106
-
Asn
GTT
[ENA]
¡û
>W2010269399
CABKSA020000001
Bacillota
Butyricicoccus pullicaecorum [CABKSA]
94047
94122
+
Asn
GTT
[ENA]
¡û
>W2010269432
CABKSA020000002
Bacillota
Butyricicoccus pullicaecorum [CABKSA]
813901
813826
-
Asn
GTT
[ENA]
¡û
>W2010284440
CABMKI010000003
Bacillota
Ruminococcaceae bacterium [CABMKI]
237658
237583
-
Asn
GTT
[ENA]
¡û
>W2010284461
CABMKI010000010
Bacillota
Ruminococcaceae bacterium [CABMKI]
102181
102106
-
Asn
GTT
[ENA]
¡û
>W2010405224
FWEL01000014
Bacillota
Pseudoflavonifractor sp. Marseille-P3106 [FWEL]
152777
152702
-
Asn
GTT
[ENA]
¡û
>W2110100218
CAJFJE010000125
Bacillota
Candidatus Heritagella intestinalis [CAJFJE]
2032
1957
-
Asn
GTT
[ENA]
¡û
>W2110100777
CAJFKV010000062
Bacillota
Candidatus Heteroruminococcus faecigallinarum [CAJFKV]
327
252
-
Asn
GTT
[ENA]
¡û
>W2110100787
CAJFKV010000103
Bacillota
Candidatus Heteroruminococcus faecigallinarum [CAJFKV]
2560
2485
-
Asn
GTT
[ENA]
¡û
>W2110102263
CAJFQF010000016
Bacillota
Candidatus Heritagella intestinalis [CAJFQF]
49023
48948
-
Asn
GTT
[ENA]
¡û
>W2110102265
CAJFQF010000017
Bacillota
Candidatus Heritagella intestinalis [CAJFQF]
58041
57966
-
Asn
GTT
[ENA]
¡û
>W2110102355
CAJFQL010000032
Bacillota
Candidatus Heritagella caecorum [CAJFQL]
24
99
+
Asn
GTT
[ENA]
¡û
>W2110102384
CAJFQR010000054
Bacillota
Candidatus Avimicrobium faecavium [CAJFQR]
10044
9969
-
Asn
GTT
[ENA]
¡û
>W2110102389
CAJFQR010000099
Bacillota
Candidatus Avimicrobium faecavium [CAJFQR]
4538
4463
-
Asn
GTT
[ENA]
¡û
>W2110103464
CAJFVO010000005
Bacillota
Candidatus Heritagella intestinalis [CAJFVO]
154217
154142
-
Asn
GTT
[ENA]
¡û
>W2110258520
JACSNR010000020
Bacillota
Hydrogenoanaerobacterium saccharovorans An564 [JACSNR]
31
106
+
Asn
GTT
[ENA]
¡û
>W2110258529
JACSNR010000065
Bacillota
Hydrogenoanaerobacterium saccharovorans An564 [JACSNR]
79
4
-
Asn
GTT
[ENA]
¡û
>W2110369676
JADPHD010000002
Bacillota
Hydrogeniiclostidium mannosilyticum 1001283B150225_161107_C12 [JADPHD]
398631
398556
-
Asn
GTT
[ENA]
¡û
>W2110369695
JADPHD010000007
Bacillota
Hydrogeniiclostidium mannosilyticum 1001283B150225_161107_C12 [JADPHD]
175634
175559
-
Asn
GTT
[ENA]
¡û
>C201312683
LR778134
Bacillota
Clostridiales bacterium CLOSBL4 [LR778134]
1137972
1138047
+
Asn
GTT
-
¡û
>C201312685
LR778134
Bacillota
Clostridiales bacterium CLOSBL4 [LR778134]
1560069
1560144
+
Asn
GTT
-
¡û
>C201312729
LR778135
Bacillota
Clostridiales bacterium CLOSBL6 [LR778135]
638090
638165
+
Asn
GTT
-
¡û
>C201312772
LR778135
Bacillota
Clostridiales bacterium CLOSBL6 [LR778135]
2765845
2765770
-
Asn
GTT
-
¡û
>C231016802
AP025582
Bacillota
Oscillospiraceae bacterium CE91-St43 [AP025582]
3107033
3106958
-
Asn
GTT
-
¡û
>C231541508
CP111108
Bacillota
Caproicibacterium sp. BJN0003 [CP111108]
2044483
2044408
-
Asn
GTT
-
¡û
>C231541510
CP111108
Bacillota
Caproicibacterium sp. BJN0003 [CP111108]
1468831
1468756
-
Asn
GTT
-
¡û
>W2130007941
CAJFVO010000011
Bacillota
Candidatus Heritagella intestinalis [CAJFVO]
24
99
+
Asn
GTT
[ENA]
¡û
>W2130014157
JACJKT010000092
Bacillota
Gemmiger formicilis An578 [JACJKT]
2313
2238
-
Asn
GTT
[ENA]
¡û
>W1511578282
LARB01000041
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
690
615
-
Asn
GTT
[ENA]
¡û
>W1511579119
LARB01000336
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
945
1020
+
Asn
GTT
[ENA]
¡û
>C161076069
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
845264
845339
+
Asn
GTT
[Ensembl]
¡û
>C161076096
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
2463966
2463891
-
Asn
GTT
[Ensembl]
¡û
>WENV081892
BAAU01003324
Gut microbiome of Human (healthy human sample F1-S, Adult, Male)
213
136
-
Asn
GTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK