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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266159 (72 seq.)
>W1711022824
LRAC01000008
Bacillota
Paenibacillus sp. DMB5 [LRAC]
484
409
-
Phe
GAA
[ENA]
¡û
>W1711022850
LRAC01000015
Bacillota
Paenibacillus sp. DMB5 [LRAC]
632
707
+
Phe
GAA
[ENA]
¡û
>W1711022891
LRAC01000127
Bacillota
Paenibacillus sp. DMB5 [LRAC]
161
236
+
Phe
GAA
[ENA]
¡û
>W131170208
ARFI01000008
Bacillota
Paenibacillus sp. HW567 [ARFI]
712097
712022
-
Phe
GAA
[ENA]
¡û
>W1711167367
LVWH01000094
Bacillota
Paenibacillus sp. P3E [LVWH]
924
999
+
Phe
GAA
[ENA]
¡û
>W1711167424
LVWH01000225
Bacillota
Paenibacillus sp. P3E [LVWH]
937
1012
+
Phe
GAA
[ENA]
¡û
>W1711167444
LVWI01000036
Bacillota
Paenibacillus helianthi P26E [LVWI]
123366
123291
-
Phe
GAA
[ENA]
¡û
>W1711167501
LVWI01000090
Bacillota
Paenibacillus helianthi P26E [LVWI]
14220
14145
-
Phe
GAA
[ENA]
¡û
>W1711169257
LVYY01000033
Bacillota
Paenibacillus sp. P32E [LVYY]
14241
14166
-
Phe
GAA
[ENA]
¡û
>W1711169294
LVYY01000077
Bacillota
Paenibacillus sp. P32E [LVYY]
834
909
+
Phe
GAA
[ENA]
¡û
>W1711169323
LVYZ01000027
Bacillota
Paenibacillus sp. P46E [LVYZ]
833
908
+
Phe
GAA
[ENA]
¡û
>W1711169363
LVYZ01000039
Bacillota
Paenibacillus sp. P46E [LVYZ]
109785
109710
-
Phe
GAA
[ENA]
¡û
>W1711632818
MPTB01000191
Bacillota
Paenibacillus borealis [MPTB]
1
76
+
Phe
GAA
[ENA]
¡û
>W1711677350
MRTL01000023
Bacillota
Paenibacillus sp. FSL H8-0259 [MRTL]
109053
108978
-
Phe
GAA
[ENA]
¡û
>W1711677988
MRTW01000005
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
214
289
+
Phe
GAA
[ENA]
¡û
>W1711678053
MRTX01000007
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
287531
287456
-
Phe
GAA
[ENA]
¡û
>W1711678131
MRTY01000023
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
3
78
+
Phe
GAA
[ENA]
¡û
>W141022528
AJTY01000074
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
486
561
+
Phe
GAA
[ENA]
¡û
>W141072299
ASPS01000001
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
627
702
+
Phe
GAA
[ENA]
¡û
>W141072347
ASPS01000083
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
11241
11166
-
Phe
GAA
[ENA]
¡û
>W141072709
ASPX01000045
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
779
854
+
Phe
GAA
[ENA]
¡û
>W141072730
ASPX01000107
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
2
77
+
Phe
GAA
[ENA]
¡û
>WENV181207621
OFAZ01007953
[OFAZ] metagenome; hydrothermal vent
768
843
+
Phe
GAA
[ENA]
¡û
>WENV181208102
OFBA01023161
[OFBA] metagenome; hydrothermal vent
108
183
+
Phe
GAA
[ENA]
¡û
>W141263393
CCDG010000006
Bacillota
Paenibacillus camerounensis G4 [CCDG]
212813
212738
-
Phe
GAA
[ENA]
¡û
>W141263432
CCDG010000070
Bacillota
Paenibacillus camerounensis G4 [CCDG]
79895
79820
-
Phe
GAA
[ENA]
¡û
>WENV170005851
AMQJ01003086
[AMQJ] sediment metagenome; subsurface aquifer sediment
2933
2858
-
Phe
GAA
[ENA]
¡û
>WENV170576129
FPKX01000006
[FPKX] hydrothermal vent metagenome; water
26747
26822
+
Phe
GAA
[ENA]
¡û
>WENV170693454
LGVC01010530
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
383
458
+
Phe
GAA
[ENA]
¡û
>WENV170694498
LGVD01073486
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
326
251
-
Phe
GAA
[ENA]
¡û
>WENV170696991
LGVF01070462
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
940
865
-
Phe
GAA
[ENA]
¡û
>C151046378
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
140781
140856
+
Phe
GAA
[Ensembl]
¡û
>C151046431
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6596148
6596073
-
Phe
GAA
[Ensembl]
¡û
>C151047517
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
138141
138216
+
Phe
GAA
[Ensembl]
¡û
>C151047570
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
7400619
7400544
-
Phe
GAA
[Ensembl]
¡û
>C151047690
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
136405
136480
+
Phe
GAA
[Ensembl]
¡û
>C151047744
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
6722470
6722395
-
Phe
GAA
[Ensembl]
¡û
>C151047777
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
136617
136692
+
Phe
GAA
[Ensembl]
¡û
>C151047830
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
6311653
6311578
-
Phe
GAA
[Ensembl]
¡û
>C151047861
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
136592
136667
+
Phe
GAA
[Ensembl]
¡û
>C151047915
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
6063977
6063902
-
Phe
GAA
[Ensembl]
¡û
>C151047946
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
137743
137818
+
Phe
GAA
[Ensembl]
¡û
>C151047999
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
7155329
7155254
-
Phe
GAA
[Ensembl]
¡û
>W2010273840
CABKUZ020000005
Bacillota
Paenibacillus ihuae [CABKUZ]
230384
230309
-
Phe
GAA
[ENA]
¡û
>W2010273856
CABKUZ020000009
Bacillota
Paenibacillus ihuae [CABKUZ]
77046
76971
-
Phe
GAA
[ENA]
¡û
>W2010609601
JABMKX010000008
Bacillota
Paenibacillus tritici LMG 29502 [JABMKX]
379461
379386
-
Phe
GAA
[ENA]
¡û
>W2010609647
JABMKX010000026
Bacillota
Paenibacillus tritici LMG 29502 [JABMKX]
823
898
+
Phe
GAA
[ENA]
¡û
>W2012197520
VWRQ01000006
Bacillota
Paenibacillus sp. SYSU G01001 [VWRQ]
315808
315733
-
Phe
GAA
[ENA]
¡û
>W2012197538
VWRQ01000014
Bacillota
Paenibacillus sp. SYSU G01001 [VWRQ]
718
793
+
Phe
GAA
[ENA]
¡û
>W2012222036
WACP01000020
Bacillota
Paenibacillus sp. SYSU G01003 [WACP]
118171
118096
-
Phe
GAA
[ENA]
¡û
>W2012328461
WHOB01000095
Bacillota
Paenibacillus sp. LMG 31459 [WHOB]
51868
51793
-
Phe
GAA
[ENA]
¡û
>W2012328464
WHOB01000098
Bacillota
Paenibacillus sp. LMG 31459 [WHOB]
18
93
+
Phe
GAA
[ENA]
¡û
>W2110235797
JACLCC010000003
Bacillota
Paenibacillus typhae I2-R2 [JACLCC]
119105
119030
-
Phe
GAA
[ENA]
¡û
>W2110235828
JACLCC010000037
Bacillota
Paenibacillus typhae I2-R2 [JACLCC]
113271
113196
-
Phe
GAA
[ENA]
¡û
>W2110540349
JAGGLV010000028
Bacillota
Paenibacillus silagei DSM 101953 [JAGGLV]
88022
87947
-
Phe
GAA
[ENA]
¡û
>W2110540355
JAGGLV010000031
Bacillota
Paenibacillus silagei DSM 101953 [JAGGLV]
81106
81031
-
Phe
GAA
[ENA]
¡û
>C211250126
CP068595
Bacillota
Paenibacillus sonchi LMG 24727 [CP068595]
2011178
2011253
+
Phe
GAA
-
¡û
>C211281170
CP070969
Bacillota
Paenibacillus sp. TB2019 [CP070969]
141910
141985
+
Phe
GAA
-
¡û
>C211281222
CP070969
Bacillota
Paenibacillus sp. TB2019 [CP070969]
5417675
5417600
-
Phe
GAA
-
¡û
>C211321514
CP073365
Bacillota
Paenibacillus tritici PH55-1 [CP073365]
141377
141452
+
Phe
GAA
-
¡û
>C211321567
CP073365
Bacillota
Paenibacillus tritici PH55-1 [CP073365]
6612886
6612811
-
Phe
GAA
-
¡û
>C231032877
CP026029
Bacillota
Paenibacillus sp. PK3_47 [CP026029]
2826534
2826609
+
Phe
GAA
-
¡û
>C231032931
CP026029
Bacillota
Paenibacillus sp. PK3_47 [CP026029]
1794965
1794890
-
Phe
GAA
-
¡û
>W1510562417
CTED01000546
Bacillota
Paenibacillus ihuae GD6 [CTED]
13537
13462
-
Phe
GAA
[ENA]
¡û
>W1510562432
CTED01000582
Bacillota
Paenibacillus ihuae GD6 [CTED]
8720
8645
-
Phe
GAA
[ENA]
¡û
>W1610871069
LRAC01000008
Bacillota
Paenibacillus sp. DMB5 [LRAC]
484
409
-
Phe
GAA
[ENA]
¡û
>W1610871095
LRAC01000015
Bacillota
Paenibacillus sp. DMB5 [LRAC]
632
707
+
Phe
GAA
[ENA]
¡û
>W1610871136
LRAC01000127
Bacillota
Paenibacillus sp. DMB5 [LRAC]
161
236
+
Phe
GAA
[ENA]
¡û
>W1710518275
FNDX01000044
Bacillota
Paenibacillus typhae [FNDX]
50305
50230
-
Phe
GAA
[ENA]
¡û
>W1710518298
FNDX01000048
Bacillota
Paenibacillus typhae [FNDX]
653
728
+
Phe
GAA
[ENA]
¡û
>W1710554410
FOIK01000004
Bacillota
Paenibacillus sp. NFR01 [FOIK]
423955
423880
-
Phe
GAA
[ENA]
¡û
>W1710554426
FOIK01000005
Bacillota
Paenibacillus sp. NFR01 [FOIK]
889
964
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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