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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266238 (15 seq.)
>W1711766324
MUYH01000002
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
1306
1231
-
Thr
CGT
[ENA]
¡û
>WENV170668022
LADL02000226
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
4042
3967
-
Thr
CGT
[ENA]
¡û
>C181062140
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
2139067
2139142
+
Thr
CGT
-
¡û
>C181068249
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
882361
882436
+
Thr
CGT
-
¡û
>W2010308780
CABWKY010000007
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
312311
312386
+
Thr
CGT
[ENA]
¡û
>W2011231686
PYIA01000074
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
3557
3482
-
Thr
CGT
[ENA]
¡û
>W2012041284
VIRF01000118
Alphaproteobacteria
Novosphingobium sp. BW1 [VIRF]
566
491
-
Thr
CGT
[ENA]
¡û
>W2110190529
JABWCU010000016
Alphaproteobacteria
Novosphingobium profundi F72 [JABWCU]
156797
156872
+
Thr
CGT
[ENA]
¡û
>C211100488
CP054856
Alphaproteobacteria
Novosphingobium sp. 502str22 [CP054856]
3909487
3909412
-
Thr
CGT
-
¡û
>W2110704935
JAIVLF010000001
Alphaproteobacteria
Novosphingobium profundi EaN21-2 [JAIVLF]
928839
928764
-
Thr
CGT
[ENA]
¡û
>W1510012825
BBNP01000003
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
174487
174562
+
Thr
CGT
[ENA]
¡û
>C231242174
CP087587
Alphaproteobacteria
Croceicoccus sp. Ery5 [CP087587]
3497139
3497064
-
Thr
CGT
-
¡û
>C231242215
CP087588
Alphaproteobacteria
Croceicoccus sp. Ery15 [CP087588]
3036098
3036173
+
Thr
CGT
-
¡û
>C161073985
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
281754
281679
-
Thr
CGT
[Ensembl]
¡û
>W1710593223
FRDF01000011
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
135679
135754
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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