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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266268 (75 seq.)
>W1711069108
LSFI01000050
Thermodesulfobacteriota
Thermodesulfatator autotrophicus [LSFI]
229
154
-
Gly
TCC
[ENA]
¡û
>W131106838
APFI01000075
Thermodesulfobacteriota
Desulfovibrio sp. Dsv1 [APFI]
16380
16305
-
Gly
TCC
[ENA]
¡û
>W131215410
ATUZ01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
149193
149118
-
Gly
TCC
[ENA]
¡û
>W131218020
ATXH01000026
Thermodesulfobacteriota
Thermodesulfatator atlanticus DSM 21156 [ATXH]
597
522
-
Gly
TCC
[ENA]
¡û
>WENV180205726
OBAH01082535
[OBAH] human gut metagenome; human gut
267
192
-
Gly
TCC
[ENA]
¢þ
>WENV180221676
OBBA01007687
[OBBA] human gut metagenome; human gut
545
470
-
Gly
TCC
[ENA]
¢þ
>WENV180295457
OBIZ01104125
[OBIZ] soil metagenome; soil
317
392
+
Gly
TCC
[ENA]
¢þ
>WENV180352043
OBLQ010152679
[OBLQ] soil metagenome; soil
508
583
+
Gly
TCC
[ENA]
¢þ
>WENV180545374
OCIT01003887
[OCIT] human gut metagenome; human gut
1639
1564
-
Gly
TCC
[ENA]
¢þ
>WENV180585004
OCOJ01777094
[OCOJ] soil metagenome; soil
142
67
-
Gly
TCC
[ENA]
¢þ
>WENV180627974
OCQO01008103
[OCQO] human gut metagenome; human gut
1610
1535
-
Gly
TCC
[ENA]
¢þ
>WENV180962701
ODUN01022408
[ODUN] human metagenome; G_DNA_Stool
1644
1569
-
Gly
TCC
[ENA]
¢þ
>WENV181116496
OEFA01009561
[OEFA] human gut metagenome; human gut
653
728
+
Gly
TCC
[ENA]
¢þ
>WENV181332811
OFMA01007327
[OFMA] human gut metagenome; human gut
3576
3651
+
Gly
TCC
[ENA]
¢þ
>WENV181525087
OGHJ01000008
[OGHJ] metagenome; Human gut stool
159712
159787
+
Gly
TCC
[ENA]
¢þ
>WENV181578128
OGJY01000406
[OGJY] metagenome; Human gut stool
47352
47427
+
Gly
TCC
[ENA]
¢þ
>WENV181621531
OGMF01007778
[OGMF] metagenome; Human gut stool
1102
1177
+
Gly
TCC
[ENA]
¢þ
>WENV181637068
OGNB01000954
[OGNB] metagenome; Human gut stool
8491
8416
-
Gly
TCC
[ENA]
¢þ
>WENV181641457
OGNF01004367
[OGNF] metagenome; Human gut stool
7960
8035
+
Gly
TCC
[ENA]
¢þ
>WENV181710327
OGPN01059098
[OGPN] human gut metagenome; faeces
320
245
-
Gly
TCC
[ENA]
¢þ
>WENV181728150
OGQA01021022
[OGQA] human gut metagenome; faeces
395
470
+
Gly
TCC
[ENA]
¢þ
>WENV181739245
OGQI01096394
[OGQI] human gut metagenome; faeces
235
160
-
Gly
TCC
[ENA]
¢þ
>WENV181767087
OGQZ01016025
[OGQZ] human gut metagenome; faeces
2828
2753
-
Gly
TCC
[ENA]
¢þ
>WENV181874541
OGXA01032902
[OGXA] human gut metagenome; faeces
582
507
-
Gly
TCC
[ENA]
¢þ
>WENV181883829
OGXI01014985
[OGXI] human gut metagenome; faeces
734
659
-
Gly
TCC
[ENA]
¢þ
>WENV181898245
OGXT01003115
[OGXT] human gut metagenome; faeces
2545
2620
+
Gly
TCC
[ENA]
¢þ
>WENV181907013
OGXZ01018649
[OGXZ] human gut metagenome; faeces
1372
1297
-
Gly
TCC
[ENA]
¢þ
>WENV181910752
OGYC01046835
[OGYC] human gut metagenome; faeces
164
239
+
Gly
TCC
[ENA]
¢þ
>WENV181913222
OGYE01004303
[OGYE] human gut metagenome; faeces
1501
1426
-
Gly
TCC
[ENA]
¢þ
>WENV181929168
OGYO01012492
[OGYO] human gut metagenome; faeces
73
148
+
Gly
TCC
[ENA]
¢þ
>WENV181955458
OGZK01003447
[OGZK] human gut metagenome; faeces
1693
1618
-
Gly
TCC
[ENA]
¢þ
>WENV181991497
OHAQ01002904
[OHAQ] human gut metagenome; faeces
1136
1211
+
Gly
TCC
[ENA]
¢þ
>WENV182392603
OIEG01060112
[OIEG] human gut metagenome; human gut
52
127
+
Gly
TCC
[ENA]
¢þ
>WENV182510071
OIWK01000590
[OIWK] human gut metagenome; faeces
32294
32219
-
Gly
TCC
[ENA]
¢þ
>WENV182523897
OIWS01079959
[OIWS] human gut metagenome; faeces
254
329
+
Gly
TCC
[ENA]
¢þ
>WENV182711098
OJPD01004969
[OJPD] human gut metagenome; stool sample
2874
2799
-
Gly
TCC
[ENA]
¢þ
>WENV182727686
OJPW01000086
[OJPW] human gut metagenome; stool sample
4921
4846
-
Gly
TCC
[ENA]
¢þ
>WENV182732062
OJQA01028535
[OJQA] human gut metagenome; stool sample
624
549
-
Gly
TCC
[ENA]
¢þ
>WENV182881022
OKSA01002890
[OKSA] human gut metagenome; faeces
12792
12867
+
Gly
TCC
[ENA]
¢þ
>WENV182888968
OKSE01015027
[OKSE] human gut metagenome; faeces
1151
1226
+
Gly
TCC
[ENA]
¢þ
>WENV182893061
OKSI01038551
[OKSI] human gut metagenome; feces
374
449
+
Gly
TCC
[ENA]
¢þ
>WENV183029646
OLFW01001012
[OLFW] human gut metagenome; faeces
17156
17231
+
Gly
TCC
[ENA]
¢þ
>WENV183032642
OLFY01000389
[OLFY] human gut metagenome; faeces
63323
63398
+
Gly
TCC
[ENA]
¢þ
>WENV183075105
OLIV01009941
[OLIV] human gut metagenome; stool sample
2166
2241
+
Gly
TCC
[ENA]
¢þ
>WENV183258508
OLRN01007445
[OLRN] human gut metagenome; faeces
2600
2525
-
Gly
TCC
[ENA]
¢þ
>WENV183269878
OLRV01001855
[OLRV] human gut metagenome; faeces
3677
3602
-
Gly
TCC
[ENA]
¢þ
>WENV183488504
OMFY01056260
[OMFY] human gut metagenome; feces
303
378
+
Gly
TCC
[ENA]
¢þ
>WENV183493085
OMGI01006154
[OMGI] human gut metagenome; human gut
3586
3661
+
Gly
TCC
[ENA]
¢þ
>WENV183505401
OMGX01002276
[OMGX] human gut metagenome; human gut
6079
6154
+
Gly
TCC
[ENA]
¢þ
>WENV183540266
OOAJ01007125
[OOAJ] human gut metagenome; human gut
433
508
+
Gly
TCC
[ENA]
¢þ
>WENV183601092
OODJ01000234
[OODJ] human gut metagenome; human gut
4760
4685
-
Gly
TCC
[ENA]
¢þ
>WENV183639712
OQVI01044120
[OQVI] human gut metagenome; human gut
817
892
+
Gly
TCC
[ENA]
¢þ
>WENV183705321
PDWI01001379
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
35584
35509
-
Gly
TCC
[ENA]
¢þ
>WENV183746975
PPCM01000080
[PPCM] marine sediment metagenome; marine sediment
157734
157809
+
Gly
TCC
[ENA]
¢þ
>WENV183747724
PPCM01022255
[PPCM] marine sediment metagenome; marine sediment
679
604
-
Gly
TCC
[ENA]
¢þ
>WENV170057522
CDZG01041007
[CDZG] gut metagenome; human stools
327
252
-
Gly
TCC
[ENA]
¢þ
>WENV170078476
CDZV01026721
[CDZV] gut metagenome; human stools
482
557
+
Gly
TCC
[ENA]
¢þ
>WENV170111046
CECF01057056
[CECF] gut metagenome; human stools
385
310
-
Gly
TCC
[ENA]
¢þ
>WENV170660623
JXWU01004837
[JXWU] soil metagenome; rice field; organic control Plot
246
321
+
Gly
TCC
[ENA]
¢þ
>WENV170661429
JXWV01025412
[JXWV] soil metagenome; rice field; organic FYM Plot
394
469
+
Gly
TCC
[ENA]
¢þ
>WENV170662377
JXWW01050715
[JXWW] soil metagenome; rice field; organic GM Plot
64
139
+
Gly
TCC
[ENA]
¢þ
>WENV170689329
LFRM01288881
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
76
1
-
Gly
TCC
[ENA]
¢þ
>WENV170786079
MDSQ01187042
[MDSQ] gut metagenome; Hindgut content
1168
1093
-
Gly
TCC
[ENA]
¢þ
>C181226989
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
4100454
4100529
+
Gly
TCC
-
¡û
>C191149689
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
2180742
2180817
+
Gly
TCC
-
¡û
>W09112336
ABXU01000003
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
23104
23029
-
Gly
TCC
[ENA]
¡û
>W09118228
ACCT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
82815
82740
-
Gly
TCC
[ENA]
¡û
>C141005261
CP006585
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [CP006585]
1883322
1883397
+
Gly
TCC
[Ensembl]
¡û
>C09103839
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
1955565
1955640
+
Gly
TCC
[Ensembl]
¡û
>C09104197
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
1302840
1302915
+
Gly
TCC
[Ensembl]
¡û
>W11106998
ACWM01000018
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
47883
47958
+
Gly
TCC
[ENA]
¡û
>C161069030
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
2122710
2122785
+
Gly
TCC
[Ensembl]
¡û
>C161069068
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
243388
243313
-
Gly
TCC
[Ensembl]
¡û
>W1610909678
LSFI01000050
Thermodesulfobacteriota
Thermodesulfatator autotrophicus [LSFI]
229
154
-
Gly
TCC
[ENA]
¡û
>W1710579859
FPIW01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
5678
5603
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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