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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266270 (56 seq.)
>WENV180131975
OATH01000500
[OATH] human gut metagenome; faeces
26971
27047
+
Arg
ACG
[ENA]
¡û
>WENV180141925
OATV01000176
[OATV] human gut metagenome; faeces
10935
10859
-
Arg
ACG
[ENA]
¡û
>WENV180142555
OATW01000927
[OATW] human gut metagenome; faeces
2323
2399
+
Arg
ACG
[ENA]
¡û
>WENV180176687
OAWD01000593
[OAWD] human gut metagenome; faeces
1786
1710
-
Arg
ACG
[ENA]
¡û
>WENV180177223
OAWE01000089
[OAWE] human gut metagenome; faeces
4537
4461
-
Arg
ACG
[ENA]
¡û
>WENV180185923
OAWU01000450
[OAWU] human gut metagenome; faeces
14567
14643
+
Arg
ACG
[ENA]
¡û
>WENV180188525
OAWX01000229
[OAWX] human gut metagenome; faeces
26616
26692
+
Arg
ACG
[ENA]
¡û
>WENV180245131
OBDM01002588
[OBDM] human gut metagenome; human gut
77
1
-
Arg
ACG
[ENA]
¡û
>WENV180431954
OBWI01000070
[OBWI] human gut metagenome; faeces
1623
1547
-
Arg
ACG
[ENA]
¡û
>WENV180481103
OBZE01000526
[OBZE] human gut metagenome; faeces
3375
3299
-
Arg
ACG
[ENA]
¡û
>WENV180481721
OBZF01000814
[OBZF] human gut metagenome; faeces
3375
3299
-
Arg
ACG
[ENA]
¡û
>WENV180612820
OCPX01005111
[OCPX] human gut metagenome; human gut
886
962
+
Arg
ACG
[ENA]
¡û
>WENV180867455
ODLK01002000
[ODLK] human metagenome; G_DNA_Stool
3471
3395
-
Arg
ACG
[ENA]
¡û
>WENV180965693
ODUP01004780
[ODUP] human metagenome; G_DNA_Stool
255
331
+
Arg
ACG
[ENA]
¡û
>WENV181217003
OFCH01000019
[OFCH] metagenome; Human gut stool
52043
51967
-
Arg
ACG
[ENA]
¡û
>WENV181218559
OFCM01004603
[OFCM] metagenome; Human gut stool
700
624
-
Arg
ACG
[ENA]
¡û
>WENV181220085
OFCQ01000055
[OFCQ] metagenome; Human gut stool
83264
83188
-
Arg
ACG
[ENA]
¡û
>WENV181225723
OFDJ01000053
[OFDJ] metagenome; Human gut stool
61002
60926
-
Arg
ACG
[ENA]
¡û
>WENV181566635
OGJJ01000030
[OGJJ] metagenome; Human gut stool
101279
101355
+
Arg
ACG
[ENA]
¡û
>WENV181658948
OGOE01000865
[OGOE] human gut metagenome; faeces
17121
17197
+
Arg
ACG
[ENA]
¡û
>WENV181746894
OGQN01005710
[OGQN] human gut metagenome; faeces
6650
6726
+
Arg
ACG
[ENA]
¡û
>WENV182141888
OHKT01009947
[OHKT] human gut metagenome; feces
242
166
-
Arg
ACG
[ENA]
¡û
>WENV182403908
OIEU01000678
[OIEU] human gut metagenome; human gut
4911
4987
+
Arg
ACG
[ENA]
¡û
>WENV182742777
OJQP01000179
[OJQP] human gut metagenome; stool sample
4999
4923
-
Arg
ACG
[ENA]
¡û
>WENV182914517
OKTP01006128
[OKTP] human gut metagenome; feces
136
212
+
Arg
ACG
[ENA]
¡û
>WENV182954331
OKWA01000454
[OKWA] human gut metagenome; human gut
13644
13720
+
Arg
ACG
[ENA]
¡û
>WENV183208870
OLQB01006522
[OLQB] human gut metagenome; faeces
1118
1042
-
Arg
ACG
[ENA]
¡û
>WENV183240638
OLRA01012200
[OLRA] human gut metagenome; faeces
423
499
+
Arg
ACG
[ENA]
¡û
>WENV183263090
OLRQ01051277
[OLRQ] human gut metagenome; faeces
168
244
+
Arg
ACG
[ENA]
¡û
>C191208471
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1465273
1465349
+
Arg
ACG
-
¡û
>C09102382
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1465478
1465554
+
Arg
ACG
-
¡û
>W1910343133
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
40248
40324
+
Arg
ACG
[ENA]
¡û
>W1910343222
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
17711
17635
-
Arg
ACG
[ENA]
¡û
>W1910343436
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
20143
20067
-
Arg
ACG
[ENA]
¡û
>W1910343487
FTRS01000271
Actinomycetota
Bifidobacterium longum [FTRS]
1589
1513
-
Arg
ACG
[ENA]
¡û
>W1810161197
PJED01000041
Actinomycetota
Bifidobacterium longum APC1465 [PJED]
32040
32116
+
Arg
ACG
[ENA]
¡û
>W2010307921
CABWJY010000025
Actinomycetota
Bifidobacterium longum subsp. longum [CABWJY]
61768
61692
-
Arg
ACG
[ENA]
¡û
>W2010399763
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
40248
40324
+
Arg
ACG
[ENA]
¡û
>W2010399852
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
17711
17635
-
Arg
ACG
[ENA]
¡û
>W2010400066
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
20143
20067
-
Arg
ACG
[ENA]
¡û
>W2010400117
FTRS01000271
Actinomycetota
Bifidobacterium longum [FTRS]
1589
1513
-
Arg
ACG
[ENA]
¡û
>W2011758563
UAQL01000014
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC13219 [UAQL]
219854
219778
-
Arg
ACG
[ENA]
¡û
>W2110014605
BJJJ01000001
Actinomycetota
Bifidobacteriaceae bacterium MCC01967 [BJJJ]
50962
50886
-
Arg
ACG
[ENA]
¡û
>C201307884
LR655210
Actinomycetota
Bifidobacterium longum subsp. Infantis USA001_1 [LR655210]
1623983
1623907
-
Arg
ACG
-
¡û
>C201308056
LR698953
Actinomycetota
Bifidobacterium longum [LR698953]
1465478
1465554
+
Arg
ACG
-
¡û
>W1510059599
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
5324
5400
+
Arg
ACG
[ENA]
¡û
>W1510059665
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
5453
5529
+
Arg
ACG
[ENA]
¡û
>W1510059732
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
4775
4851
+
Arg
ACG
[ENA]
¡û
>W1510059799
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
5452
5528
+
Arg
ACG
[ENA]
¡û
>W1510059865
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
40200
40276
+
Arg
ACG
[ENA]
¡û
>W1510059932
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
40228
40304
+
Arg
ACG
[ENA]
¡û
>W1510059999
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
40224
40300
+
Arg
ACG
[ENA]
¡û
>W1510060066
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
40196
40272
+
Arg
ACG
[ENA]
¡û
>C11103161
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1465269
1465345
+
Arg
ACG
-
¡û
>C11103228
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1465269
1465345
+
Arg
ACG
-
¡û
>W1610518908
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
45905
45829
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK