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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266654 (103 seq.)
>W1710863328
LMFA01000016
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
2412
2487
+
Trp
CCA
[ENA]
¡û
>W1710877593
LMQF01000053
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
3510
3585
+
Trp
CCA
[ENA]
¡û
>W1710877623
LMQG01000027
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
13534
13459
-
Trp
CCA
[ENA]
¡û
>W1710878811
LMRG01000018
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
13537
13462
-
Trp
CCA
[ENA]
¡û
>W1711350399
MCRJ01000122
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
261
336
+
Trp
CCA
[ENA]
¡û
>W1711385457
MEEF01000135
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
2666
2741
+
Trp
CCA
[ENA]
¡û
>W131165014
ARBG01000175
Alphaproteobacteria
Rhizobium giardinii bv. giardinii H152 [ARBG]
17222
17147
-
Trp
CCA
[ENA]
¡û
>W131182217
ARQE01000025
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
16382
16307
-
Trp
CCA
[ENA]
¡û
>C171074278
CP018171
Alphaproteobacteria
Aquibium oceanicum B7 [CP018171]
3330108
3330033
-
Trp
CCA
-
¡û
>WENV181163428
OEIQ01024935
[OEIQ] soil metagenome; soil
5
80
+
Trp
CCA
[ENA]
¡û
>W141242831
CAIU01000014
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
646
721
+
Trp
CCA
[ENA]
¡û
>C181227362
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
1624815
1624890
+
Trp
CCA
-
¡û
>C191000419
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
1401634
1401559
-
Trp
CCA
-
¡û
>W141819294
JQME01000026
Alphaproteobacteria
Rhizobium sp. CF258 [JQME]
2199
2274
+
Trp
CCA
[ENA]
¡û
>W141819342
JQMF01000042
Alphaproteobacteria
Rhizobium sp. CF097 [JQMF]
2307
2382
+
Trp
CCA
[ENA]
¡û
>W141821336
JQNM01000026
Alphaproteobacteria
Rhizobium sp. YR295 [JQNM]
2512
2587
+
Trp
CCA
[ENA]
¡û
>W1910744160
MIAA01000031
Alphaproteobacteria
Rhodospirillales bacterium RIFCSPLOWO2_02_FULL_58_16 [MIAA]
224
299
+
Trp
CCA
[ENA]
¡û
>W1910744210
MIAB01000056
Alphaproteobacteria
Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_58_28 [MIAB]
219
294
+
Trp
CCA
[ENA]
¡û
>W1911810733
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
2762708
2762783
+
Trp
CCA
[ENA]
¡û
>W1810192927
PKMZ01000020
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
7966
8041
+
Trp
CCA
[ENA]
¡û
>W1810390358
PXYK01000001
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
5069
5144
+
Trp
CCA
[ENA]
¡û
>W1810390411
PXYL01000001
Alphaproteobacteria
Mesorhizobium soli JCM 19897 [PXYL]
656518
656593
+
Trp
CCA
[ENA]
¡û
>W1810595893
QGGG01000002
Alphaproteobacteria
Pseudaminobacter salicylatoxidans DSM 6986 [QGGG]
17677
17752
+
Trp
CCA
[ENA]
¡û
>W1810889083
QURL01000005
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
181039
180964
-
Trp
CCA
[ENA]
¡û
>SRA1016477
SRR023846.520069
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
18
93
+
Trp
CCA
[SRA]
>W2010302683
CABVLD010000014
Alphaproteobacteria
Rhizobium sp. EC-SD404 [CABVLD]
808080
808005
-
Trp
CCA
[ENA]
¡û
>W2010437251
JAAAMG010000008
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
86741
86666
-
Trp
CCA
[ENA]
¡û
>W2010493707
JAAKZF010000204
Alphaproteobacteria
Mesorhizobium camelthorni CCNWXJ 40-4 [JAAKZF]
202
277
+
Trp
CCA
[ENA]
¡û
>W2010493714
JAAKZG010000001
Alphaproteobacteria
Mesorhizobium zhangyense CGMCC 1.15528 [JAAKZG]
374118
374193
+
Trp
CCA
[ENA]
¡û
>W2010595410
JABETK010000002
Alphaproteobacteria
Mesorhizobium sediminum KCTC 42205 [JABETK]
613542
613617
+
Trp
CCA
[ENA]
¡û
>W2010694435
JACHBK010000025
Alphaproteobacteria
Rhizobium giardinii SEMIA 4084 [JACHBK]
17135
17060
-
Trp
CCA
[ENA]
¡û
>W2010725774
JACIEK010000031
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
1892
1967
+
Trp
CCA
[ENA]
¡û
>W2010877592
MIAA01000031
Alphaproteobacteria
Rhodospirillales bacterium RIFCSPLOWO2_02_FULL_58_16 [MIAA]
224
299
+
Trp
CCA
[ENA]
¡û
>W2010877642
MIAB01000056
Alphaproteobacteria
Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_58_28 [MIAB]
219
294
+
Trp
CCA
[ENA]
¡û
>W2011345409
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
2762708
2762783
+
Trp
CCA
[ENA]
¡û
>W2011399201
RCIZ01000005
Alphaproteobacteria
Mesorhizobium sp. YM1C-6-2 [RCIZ]
130140
130065
-
Trp
CCA
[ENA]
¡û
>W2011495280
RWKW01000137
Alphaproteobacteria
Mesorhizobium sp. B2.3 [RWKW]
16695
16620
-
Trp
CCA
[ENA]
¡û
>W2011649963
SNXY01000006
Alphaproteobacteria
Oharaeibacter diazotrophicus DSM 102969 [SNXY]
198147
198222
+
Trp
CCA
[ENA]
¡û
>W2011666552
SOZD01000001
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
54991
55066
+
Trp
CCA
[ENA]
¡û
>W2011666585
SOZD01000005
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
297244
297319
+
Trp
CCA
[ENA]
¡û
>W2011790478
UCEZ01000088
Alphaproteobacteria
Rhizobiales bacterium [UCEZ]
2241
2316
+
Trp
CCA
[ENA]
¡û
>W2011796277
UCJZ01000076
Alphaproteobacteria
Rhizobiales bacterium [UCJZ]
3109
3184
+
Trp
CCA
[ENA]
¡û
>W2011798190
UCLP01000073
Alphaproteobacteria
Rhizobiales bacterium [UCLP]
16637
16562
-
Trp
CCA
[ENA]
¡û
>W2011799163
UCML01000043
Alphaproteobacteria
Rhizobiales bacterium [UCML]
2147
2222
+
Trp
CCA
[ENA]
¡û
>W2011799211
UCMM01000134
Alphaproteobacteria
Rhizobiales bacterium [UCMM]
2169
2244
+
Trp
CCA
[ENA]
¡û
>W2011799393
UCMQ01000109
Alphaproteobacteria
Rhizobiales bacterium [UCMQ]
2149
2224
+
Trp
CCA
[ENA]
¡û
>W2011799526
UCMT01000078
Alphaproteobacteria
Rhizobiales bacterium [UCMT]
16631
16556
-
Trp
CCA
[ENA]
¡û
>W2011799779
UCMZ01000050
Alphaproteobacteria
Rhizobiales bacterium [UCMZ]
19558
19633
+
Trp
CCA
[ENA]
¡û
>W2011799907
UCNC01000143
Alphaproteobacteria
Rhizobiales bacterium [UCNC]
16636
16561
-
Trp
CCA
[ENA]
¡û
>W2011800875
UCOA01000060
Alphaproteobacteria
Rhizobiales bacterium [UCOA]
16636
16561
-
Trp
CCA
[ENA]
¡û
>W2011802053
UEHD01000050
Alphaproteobacteria
Rhizobiales bacterium [UEHD]
17970
17895
-
Trp
CCA
[ENA]
¡û
>W2011803952
UEIU01000122
Alphaproteobacteria
Rhizobiales bacterium [UEIU]
3153
3228
+
Trp
CCA
[ENA]
¡û
>W2011847346
UIBX01000001
Alphaproteobacteria
Rhizobiales bacterium [UIBX]
2213770
2213845
+
Trp
CCA
[ENA]
¡û
>W2011847412
UIBY01000001
Alphaproteobacteria
Rhizobiales bacterium [UIBY]
3939165
3939090
-
Trp
CCA
[ENA]
¡û
>W2011847589
UICC01000001
Alphaproteobacteria
Rhizobiales bacterium [UICC]
2125848
2125923
+
Trp
CCA
[ENA]
¡û
>W2011848020
UICM01000001
Alphaproteobacteria
Rhizobiales bacterium [UICM]
3311404
3311479
+
Trp
CCA
[ENA]
¡û
>W2011848161
UICP01000001
Alphaproteobacteria
Rhizobiales bacterium [UICP]
2997436
2997511
+
Trp
CCA
[ENA]
¡û
>W2012136489
VSZS01000043
Alphaproteobacteria
Mesorhizobium sp. MaA-C15 [VSZS]
17985
17910
-
Trp
CCA
[ENA]
¡û
>W2012330321
WHSB01000027
Alphaproteobacteria
Shinella sp. CPCC 100929 [WHSB]
17385
17310
-
Trp
CCA
[ENA]
¡û
>W2012410915
WPHG01000002
Alphaproteobacteria
Nitratireductor sp. CAU 1489 [WPHG]
533191
533266
+
Trp
CCA
[ENA]
¡û
>W2012425525
WQNH01000072
Alphaproteobacteria
Chelativorans sp. lm93 [WQNH]
17005
16930
-
Trp
CCA
[ENA]
¡û
>W2012425571
WQNI01000030
Alphaproteobacteria
Chelativorans sp. lm92 [WQNI]
583
658
+
Trp
CCA
[ENA]
¡û
>W2012444461
WUJM01000034
Alphaproteobacteria
Oharaeibacter diazotrophicus SM30 [WUJM]
37308
37233
-
Trp
CCA
[ENA]
¡û
>W2012469036
WVVV01000014
Alphaproteobacteria
Chelativorans sp. ZYF759 [WVVV]
100913
100838
-
Trp
CCA
[ENA]
¡û
>W2110050671
BMZQ01000001
Alphaproteobacteria
Corticibacterium populi KCTC 42249 [BMZQ]
735514
735589
+
Trp
CCA
[ENA]
¡û
>W2110119716
CAJPFN010000134
Alphaproteobacteria
Rhizobiaceae bacterium [CAJPFN]
1382
1457
+
Trp
CCA
[ENA]
¡û
>W2110276143
JACVVX010000018
Alphaproteobacteria
Oryzicola mucosus Rool2 [JACVVX]
1291
1366
+
Trp
CCA
[ENA]
¡û
>W2110403258
JADZLT010000047
Alphaproteobacteria
Methylobrevis albus L22 [JADZLT]
1647
1722
+
Trp
CCA
[ENA]
¡û
>W2110454853
JAEUAO010000009
Alphaproteobacteria
Rhizobium herbae HU44 [JAEUAO]
16735
16660
-
Trp
CCA
[ENA]
¡û
>W2110514143
JAFMNX010000001
Alphaproteobacteria
Tianweitania sp. BSSL-BM11 [JAFMNX]
1313602
1313677
+
Trp
CCA
[ENA]
¡û
>W2110515280
JAFMPP010000014
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
40851
40926
+
Trp
CCA
[ENA]
¡û
>W2110515526
JAFMPY010000006
Alphaproteobacteria
Jiella sp. MQZ13P-4 [JAFMPY]
66780
66855
+
Trp
CCA
[ENA]
¡û
>W2110517988
JAFNIO010000010
Alphaproteobacteria
Phyllobacteriaceae bacterium CO17 [JAFNIO]
43197
43272
+
Trp
CCA
[ENA]
¡û
>W2110556304
JAGIYY010000017
Alphaproteobacteria
Tianweitania sediminis Z8 [JAGIYY]
16391
16316
-
Trp
CCA
[ENA]
¡û
>W2110556708
JAGJCF010000002
Alphaproteobacteria
Jiella sp. KSK16Y-1 [JAGJCF]
160539
160464
-
Trp
CCA
[ENA]
¡û
>C211009137
AP023262
Alphaproteobacteria
Mesorhizobium sp. L-8-3 [AP023262]
4915096
4915171
+
Trp
CCA
-
¡û
>C211009186
AP023263
Alphaproteobacteria
Mesorhizobium sp. L-8-10 [AP023263]
4847396
4847471
+
Trp
CCA
-
¡û
>C211063887
CP045492
Alphaproteobacteria
Mesorhizobium sp. NBSH29 [CP045492]
2724887
2724962
+
Trp
CCA
-
¡û
>C211141964
CP061080
Alphaproteobacteria
Mesorhizobium sp. N3 [CP061080]
1994889
1994814
-
Trp
CCA
-
¡û
>C211158647
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
3138415
3138340
-
Trp
CCA
-
¡û
>C211310736
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
2615141
2615216
+
Trp
CCA
-
¡û
>W2110717204
JAJAVB010000045
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
8333
8408
+
Trp
CCA
[ENA]
¡û
>C231260358
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
3507498
3507423
-
Trp
CCA
-
¡û
>C231555009
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
434901
434826
-
Trp
CCA
-
¡û
>W1511344073
JRFJ01000002
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
609770
609845
+
Trp
CCA
[ENA]
¡û
>W1511399944
JTGD01000121
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
10316
10241
-
Trp
CCA
[ENA]
¡û
>W1511687986
LFVY01000031
Alphaproteobacteria
Nitratireductor soli ZZ-1 [LFVY]
16524
16449
-
Trp
CCA
[ENA]
¡û
>C161003871
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2971463
2971388
-
Trp
CCA
[Ensembl]
¡û
>W1610056526
BBWI01000023
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
15762
15687
-
Trp
CCA
[ENA]
¡û
>W1610056687
BBWL01000064
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
1859
1934
+
Trp
CCA
[ENA]
¡û
>W1610056893
BBWQ01000004
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
567
642
+
Trp
CCA
[ENA]
¡û
>W1610057087
BBWT01000074
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
15767
15692
-
Trp
CCA
[ENA]
¡û
>W1610725674
LMFA01000016
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
2412
2487
+
Trp
CCA
[ENA]
¡û
>W1610739939
LMQF01000053
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
3510
3585
+
Trp
CCA
[ENA]
¡û
>W1610739969
LMQG01000027
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
13534
13459
-
Trp
CCA
[ENA]
¡û
>W1610741157
LMRG01000018
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
13537
13462
-
Trp
CCA
[ENA]
¡û
>W1710015482
AQQS01000010
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
71897
71822
-
Trp
CCA
[ENA]
¡û
>W1710053225
BBWI01000023
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
15762
15687
-
Trp
CCA
[ENA]
¡û
>W1710053386
BBWL01000064
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
1859
1934
+
Trp
CCA
[ENA]
¡û
>W1710053592
BBWQ01000004
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
567
642
+
Trp
CCA
[ENA]
¡û
>W1710053786
BBWT01000074
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
15767
15692
-
Trp
CCA
[ENA]
¡û
>W1710578150
FPBI01000049
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
1231
1306
+
Trp
CCA
[ENA]
¡û
>W1710588114
FQZC01000001
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
573159
573234
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK