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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266672 (70 seq.)
>W1710861922
LMDZ01000007
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
129630
129555
-
Met
CAT
[ENA]
¡û
>W1710862193
LMEE01000002
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
133234
133159
-
Met
CAT
[ENA]
¡û
>W1710866774
LMHT01000011
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
93663
93738
+
Met
CAT
[ENA]
¡û
>W1710867707
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
132765
132690
-
Met
CAT
[ENA]
¡û
>W1710872704
LMME01000018
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
9960
9885
-
Met
CAT
[ENA]
¡û
>W1710872999
LMML01000010
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
11438
11363
-
Met
CAT
[ENA]
¡û
>W1710873693
LMMZ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
443946
443871
-
Met
CAT
[ENA]
¡û
>W1710874589
LMNS01000038
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
505678
505603
-
Met
CAT
[ENA]
¡û
>W1710877250
LMPY01000010
Alphaproteobacteria
Methylobacterium sp. Leaf361 [LMPY]
51186
51261
+
Met
CAT
[ENA]
¡û
>W1711067407
LSEF01000081
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
66632
66707
+
Met
CAT
[ENA]
¡û
>W1711129958
LUUM01000254
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
91353
91278
-
Met
CAT
[ENA]
¡û
>W131166442
ARCM01000001
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
221280
221355
+
Met
CAT
[ENA]
¡û
>W131175710
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
580209
580134
-
Met
CAT
[ENA]
¡û
>W1711179400
LWHQ01000010
Alphaproteobacteria
Methylobacterium platani [LWHQ]
1621
1546
-
Met
CAT
[ENA]
¡û
>W1711386078
MEEW01000080
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
1015
940
-
Met
CAT
[ENA]
¡û
>PL171000067
AP014705
Alphaproteobacteria
Methylobacterium aquaticum MA-22A plasmid:pMaq22A_1p
1272731
1272806
+
Met
CAT
[ENA]
¡û
>WENV180016436
FSUX01001563
[FSUX] metagenome; soil
6923
6848
-
Ile2
CAT
[ENA]
¡û
>WENV180026300
FTIT01001142
[FTIT] metagenome; soil
1591
1666
+
Ile2
CAT
[ENA]
¡û
>WENV180026402
FTIT01056844
[FTIT] metagenome; soil
528
453
-
Ile2
CAT
[ENA]
¡û
>WENV180034339
FTKP01278629
[FTKP] metagenome; soil
367
442
+
Ile2
CAT
[ENA]
¡û
>WENV181165236
OEIR01681398
[OEIR] soil metagenome; soil
77
152
+
Ile2
CAT
[ENA]
¡û
>W141216051
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1664161
1664086
-
Met
CAT
[ENA]
¡û
>WENV170556501
CXWL01009583
[CXWL] groundwater metagenome; biofilm material
22135
22210
+
Met
CAT
[ENA]
¡û
>WENV170556664
CXWL01011822
[CXWL] groundwater metagenome; biofilm material
4185
4110
-
Met
CAT
[ENA]
¡û
>WENV170706465
LNAP01003258
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5703
5628
-
Met
CAT
[ENA]
¡û
>WENV170707724
LNAP01031347
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2608
2533
-
Met
CAT
[ENA]
¡û
>WENV170708130
LNAP01051545
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
115
190
+
Met
CAT
[ENA]
¡û
>C181180141
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2860740
2860665
-
Met
CAT
-
¡û
>C191171961
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
3908050
3907975
-
Met
CAT
-
¡û
>W141701374
JMKQ01000004
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
692300
692225
-
Met
CAT
[ENA]
¡û
>W1810150194
PIUM01000064
Alphaproteobacteria
Telmatospirillum siberiense 26-4b1 [PIUM]
6395
6320
-
Met
CAT
[ENA]
¡û
>W2010100641
BJVP01000008
Alphaproteobacteria
Methylorubrum extorquens NBRC 15911 [BJVP]
132089
132014
-
Ile2
CAT
[ENA]
¡û
>W2010712887
JACHOS010000014
Alphaproteobacteria
Methylorubrum rhodesianum DSM 5687 [JACHOS]
134190
134115
-
Ile2
CAT
[ENA]
¡û
>W2010722807
JACICD010000004
Alphaproteobacteria
Angulomicrobium tetraedrale DSM 5895 [JACICD]
406212
406287
+
Ile2
CAT
[ENA]
¡û
>W2010724563
JACIDK010000004
Alphaproteobacteria
Phenylobacterium haematophilum DSM 21793 [JACIDK]
86215
86140
-
Ile2
CAT
[ENA]
¡û
>W2010724677
JACIDN010000003
Alphaproteobacteria
Methylobacterium brachythecii DSM 24105 [JACIDN]
319153
319228
+
Ile2
CAT
[ENA]
¡û
>W2011496757
RXIO01000080
Alphaproteobacteria
Ancylobacter aquaticus UV5 [RXIO]
27773
27698
-
Ile2
CAT
[ENA]
¡û
>W2011624023
SLXZ01000007
Alphaproteobacteria
Methylobacterium sp. BK227 [SLXZ]
8002
7927
-
Ile2
CAT
[ENA]
¡û
>W2011659078
SOEJ01000008
Alphaproteobacteria
Methylosinus sp. sav-2 [SOEJ]
155580
155505
-
Ile2
CAT
[ENA]
¡û
>W2012156703
VUOK01000030
Alphaproteobacteria
Methylobacterium sp. 2A [VUOK]
38108
38183
+
Ile2
CAT
[ENA]
¡û
>W2110157041
JAAQRC010000001
Alphaproteobacteria
Methylobacterium sp. SyP6R [JAAQRC]
4683781
4683706
-
Ile2
CAT
[ENA]
¡û
>W2110278858
JACWCT010000164
Alphaproteobacteria
Methylobacterium ajmalii IF7SW-B2 [JACWCT]
51400
51475
+
Ile2
CAT
[ENA]
¡û
>W2110278899
JACWCU010000088
Alphaproteobacteria
Methylobacterium ajmalii IIF1SW-B5 [JACWCU]
51394
51469
+
Ile2
CAT
[ENA]
¡û
>W2110358630
JADNQW010000005
Alphaproteobacteria
Methylosinus sp. H3A [JADNQW]
3092959
3092884
-
Ile2
CAT
[ENA]
¡û
>W2110504593
JAFIWG010000001
Alphaproteobacteria
Methylobacterium sp. OT2 [JAFIWG]
2346078
2346003
-
Ile2
CAT
[ENA]
¡û
>W2110569113
JAGSGD010000001
Alphaproteobacteria
Phenylobacterium sp. 20VBR1 [JAGSGD]
3005428
3005353
-
Ile2
CAT
[ENA]
¡û
>W2110593098
JAHCQH010000020
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
297136
297211
+
Ile2
CAT
[ENA]
¡û
>C211060176
CP043627
Alphaproteobacteria
Methylobacterium aquaticum BG2 [CP043627]
1086281
1086356
+
Ile2
CAT
-
¡û
>C231259835
CP089295
Alphaproteobacteria
Methylobacterium currus TP-3 [CP089295, CP089296]
6043731
6043806
+
Ile2
CAT
-
¡û
>W2110762715
RCVL01000008
Alphaproteobacteria
Methylorubrum sp. DB1722 [RCVL]
211267
211192
-
Ile2
CAT
[ENA]
¡û
>C231434460
CP101283
Alphaproteobacteria
Phenylobacterium sp. LH3H17 [CP101283]
3039566
3039491
-
Ile2
CAT
-
¡û
>C231561321
CP114599
Alphaproteobacteria
Phenylobacterium sp. NIBR 498073 [CP114599]
1615005
1615080
+
Ile2
CAT
-
¡û
>W2130017657
JACWCV010000416
Alphaproteobacteria
Methylobacterium ajmalii IIF4SW-B5 [JACWCV]
1782
1857
+
Ile2
CAT
[ENA]
¡û
>W2310026273
BSPG01000001
Alphaproteobacteria
Methylobacterium brachythecii NBRC 107710 [BSPG]
202083
202158
+
Ile2
CAT
[ENA]
¡û
>W1511507905
JXOD01000199
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
4073
4148
+
Met
CAT
[ENA]
¡û
>W1610047405
BBDG01000481
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
1186
1111
-
Met
CAT
[ENA]
¡û
>W1610724268
LMDZ01000007
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
129630
129555
-
Met
CAT
[ENA]
¡û
>W1610724539
LMEE01000002
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
133234
133159
-
Met
CAT
[ENA]
¡û
>W1610729120
LMHT01000011
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
93663
93738
+
Met
CAT
[ENA]
¡û
>W1610730053
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
132765
132690
-
Met
CAT
[ENA]
¡û
>W1610941031
LUUM01000254
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
91353
91278
-
Met
CAT
[ENA]
¡û
>W1610987301
LWHQ01000010
Alphaproteobacteria
Methylobacterium platani [LWHQ]
1621
1546
-
Met
CAT
[ENA]
¡û
>W1710044010
BBDG01000481
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
1186
1111
-
Met
CAT
[ENA]
¡û
>W1710505297
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
322599
322524
-
Met
CAT
[ENA]
¡û
>W1710523130
FNHS01000010
Alphaproteobacteria
Methylobacterium phyllostachyos [FNHS]
43978
44053
+
Met
CAT
[ENA]
¡û
>W1710547191
FOCS01000020
Alphaproteobacteria
Methylobacterium sp. UNC300MFChir4.1 [FOCS]
68769
68694
-
Met
CAT
[ENA]
¡û
>W1710548800
FOEB01000003
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
42776
42851
+
Met
CAT
[ENA]
¡û
>W1710560687
FONO01000020
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
8186
8111
-
Met
CAT
[ENA]
¡û
>W1710563184
FOPM01000013
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
118847
118922
+
Met
CAT
[ENA]
¡û
>W1710579026
FPCB01000004
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
298572
298647
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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