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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266685 (124 seq.)
>W1710872870
LMMI01000012
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
7630
7705
+
Thr
TGT
[ENA]
¡û
>W1710872980
LMMK01000050
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
61043
61118
+
Thr
TGT
[ENA]
¡û
>W1710873013
LMML01000028
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
478293
478218
-
Thr
TGT
[ENA]
¡û
>W1710873118
LMMN01000056
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
866
791
-
Thr
TGT
[ENA]
¡û
>W1710873241
LMMQ01000029
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
231070
231145
+
Thr
TGT
[ENA]
¡û
>W1710873437
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
555532
555607
+
Thr
TGT
[ENA]
¡û
>W1710873559
LMMW01000024
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
16605
16680
+
Thr
TGT
[ENA]
¡û
>W1710873581
LMMX01000001
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
619741
619666
-
Thr
TGT
[ENA]
¡û
>W1710873709
LMMZ01000038
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
158209
158134
-
Thr
TGT
[ENA]
¡û
>W1710873907
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
1003505
1003580
+
Thr
TGT
[ENA]
¡û
>W1710873995
LMNG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
193441
193516
+
Thr
TGT
[ENA]
¡û
>W1710874143
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
237822
237897
+
Thr
TGT
[ENA]
¡û
>W1710874262
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
385850
385925
+
Thr
TGT
[ENA]
¡û
>W1710874349
LMNN01000019
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
30892
30817
-
Thr
TGT
[ENA]
¡û
>W1710874443
LMNP01000030
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
31129
31054
-
Thr
TGT
[ENA]
¡û
>W1710874496
LMNQ01000040
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
30949
30874
-
Thr
TGT
[ENA]
¡û
>W1710874563
LMNS01000011
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
14259
14334
+
Thr
TGT
[ENA]
¡û
>W1710874638
LMNU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
657740
657665
-
Thr
TGT
[ENA]
¡û
>W1710878319
LMQV01000042
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
270211
270286
+
Thr
TGT
[ENA]
¡û
>W1710878541
LMRA01000023
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
6463
6388
-
Thr
TGT
[ENA]
¡û
>W1710878696
LMRE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
580293
580218
-
Thr
TGT
[ENA]
¡û
>W1710879189
LMRM01000015
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
61068
61143
+
Thr
TGT
[ENA]
¡û
>W1711078716
LSNC01000124
Alphaproteobacteria
Methylorubrum populi [LSNC]
208148
208223
+
Thr
TGT
[ENA]
¡û
>W1711262683
LYXZ01000089
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
5488
5413
-
Thr
TGT
[ENA]
¡û
>W1711571754
MNAO01000125
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
1174
1249
+
Thr
TGT
[ENA]
¡û
>W131051731
AMXU01000054
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
108679
108754
+
Thr
TGT
[ENA]
¡û
>C171092154
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
4886701
4886626
-
Thr
TGT
-
¡û
>C171115192
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
3908629
3908704
+
Thr
TGT
-
¡û
>w001813
AAAP01001454
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
1074
1151
+
Thr
TGT
[ENA]
¡û
>WENV180692754
OCZS010740422
[OCZS] soil metagenome; soil
148
223
+
Thr
TGT
[ENA]
¡û
>WENV181227841
OFDN01057187
[OFDN] hot springs metagenome; Water
409
334
-
Thr
TGT
[ENA]
¡û
>W08002412
ABEX01000009
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
157256
157184
-
Thr
TGT
[ENA]
¡û
>C08006485
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
2388918
2388993
+
Thr
TGT
[Ensembl]
¡û
>C08006633
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
2249485
2249560
+
Thr
TGT
[Ensembl]
¡û
>WENV170593187
FUFK010851996
[FUFK] metagenome; unknown
1098
1023
-
Thr
TGT
[ENA]
¡û
>C181000346
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
2422279
2422354
+
Thr
TGT
-
¡û
>W09106834
ABEC01000001
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
436228
436153
-
Thr
TGT
[ENA]
¡û
>W09107173
ABFR01000003
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
41823
41898
+
Thr
TGT
[ENA]
¡û
>C181175633
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
2537514
2537589
+
Thr
TGT
-
¡û
>C181227863
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
3524436
3524361
-
Thr
TGT
-
¡û
>C09107416
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
2548474
2548549
+
Thr
TGT
[Ensembl]
¡û
>C09107501
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
2835288
2835363
+
Thr
TGT
[Ensembl]
¡û
>C09107603
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
2207510
2207585
+
Thr
TGT
[Ensembl]
¡û
>W1810057186
PDHT01000001
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
230454
230379
-
Thr
TGT
[ENA]
¡û
>W1810325497
PUEJ01000004
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
1460
1385
-
Thr
TGT
[ENA]
¡û
>W1810763404
QQBB01000002
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
408072
407997
-
Thr
TGT
[ENA]
¡û
>SRA1014850
SRR023845.343456
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
218
143
-
Thr
TGT
[SRA]
>SRA1014859
SRR023845.347420
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
236
161
-
Thr
TGT
[SRA]
>W2010100639
BJVP01000007
Alphaproteobacteria
Methylorubrum extorquens NBRC 15911 [BJVP]
30718
30643
-
Thr
TGT
[ENA]
¡û
>W2010105718
BJZT01000031
Alphaproteobacteria
Methylobacterium haplocladii NBRC 107714 [BJZT]
19703
19628
-
Thr
TGT
[ENA]
¡û
>W2010535237
JAAPAY010000045
Alphaproteobacteria
Methylobacterium sp. ISTM1 [JAAPAY]
165498
165573
+
Thr
TGT
[ENA]
¡û
>W2010609950
JABMLM010000394
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
4066
4141
+
Thr
TGT
[ENA]
¡û
>W2010712894
JACHOS010000018
Alphaproteobacteria
Methylorubrum rhodesianum DSM 5687 [JACHOS]
97176
97251
+
Thr
TGT
[ENA]
¡û
>W2010715311
JACHWM010000008
Alphaproteobacteria
Methylobacterium sp. R2-1 [JACHWM]
31399
31324
-
Thr
TGT
[ENA]
¡û
>W2010724697
JACIDN010000008
Alphaproteobacteria
Methylobacterium brachythecii DSM 24105 [JACIDN]
238604
238679
+
Thr
TGT
[ENA]
¡û
>W2010740281
JACJIB010000001
Alphaproteobacteria
Methylorubrum thiocyanatum DSM 11490 [JACJIB]
547908
547983
+
Thr
TGT
[ENA]
¡û
>W2010740980
JACJIN010000006
Alphaproteobacteria
Methylobacterium sp. RAS18 [JACJIN]
30513
30438
-
Thr
TGT
[ENA]
¡û
>W2011398164
RCIG01000032
Alphaproteobacteria
Methylobacterium sp. DB1607 [RCIG]
34622
34697
+
Thr
TGT
[ENA]
¡û
>W2011540749
SCOS01000002
Alphaproteobacteria
Methylobacterium sp. L1A1 [SCOS]
72215
72290
+
Thr
TGT
[ENA]
¡û
>W2011638924
SMNT01000076
Alphaproteobacteria
Methylobacterium sp. 17J42-1 [SMNT]
18325
18250
-
Thr
TGT
[ENA]
¡û
>W2011676666
SRHQ01000004
Alphaproteobacteria
Methylorubrum sp. Q1 [SRHQ]
221642
221717
+
Thr
TGT
[ENA]
¡û
>W2011976677
VCMV01000042
Alphaproteobacteria
Microvirga sp. CDVBN77 [VCMV]
13081
13006
-
Thr
TGT
[ENA]
¡û
>W2012126884
VRUZ01000050
Alphaproteobacteria
Methylobacterium sp. WL69 [VRUZ]
7765
7840
+
Thr
TGT
[ENA]
¡û
>W2012127131
VRVE01000045
Alphaproteobacteria
Methylobacterium sp. WL9 [VRVE]
33242
33317
+
Thr
TGT
[ENA]
¡û
>W2012311073
WEKV01000009
Alphaproteobacteria
Methylorubrum populi Pinkel [WEKV]
309784
309859
+
Thr
TGT
[ENA]
¡û
>W2110278965
JACWCW010000014
Alphaproteobacteria
Methylorubrum rhodesianum I1-R3 [JACWCW]
58093
58168
+
Thr
TGT
[ENA]
¡û
>W2110280727
JACWFI010000039
Alphaproteobacteria
Methylorubrum populi I1-R3 [JACWFI]
109004
108929
-
Thr
TGT
[ENA]
¡û
>W2110523000
JAGEMM010000001
Alphaproteobacteria
Microvirga sp. 3D7 [JAGEMM]
674002
674077
+
Thr
TGT
[ENA]
¡û
>W2110555358
JAGIPY010000003
Alphaproteobacteria
Labrys sp. LIt4 [JAGIPY]
384781
384706
-
Thr
TGT
[ENA]
¡û
>C201079714
CP039546
Alphaproteobacteria
Methylorubrum populi YC-XJ1 [CP039546]
2174710
2174785
+
Thr
TGT
-
¡û
>C201133563
CP043489
Alphaproteobacteria
Labrys neptuniae KNU-23 [CP043488, CP043489]
607825
607750
-
Thr
TGT
-
¡û
>C201203439
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
2128832
2128907
+
Thr
TGT
-
¡û
>C201203495
CP047608
Alphaproteobacteria
Methylobacterium sp. CLZ [CP047608]
2128824
2128899
+
Thr
TGT
-
¡û
>W2110695579
JAIRBM010000002
Alphaproteobacteria
Microvirga sp. WGZ8 [JAIRBM]
407138
407063
-
Thr
TGT
[ENA]
¡û
>W2110718249
JAJBBR010000009
Alphaproteobacteria
Microvirga sp. SM9 [JAJBBR]
232835
232760
-
Thr
TGT
[ENA]
¡û
>W2110736655
JAJDOP010000009
Alphaproteobacteria
Microvirga rosea CGMCC1.16488 [JAJDOP]
103826
103751
-
Thr
TGT
[ENA]
¡û
>C231024541
AP025942
Alphaproteobacteria
Methylorubrum sp. GM97 [AP025942]
2320323
2320398
+
Thr
TGT
-
¡û
>C231252060
CP088247
Alphaproteobacteria
Methylorubrum sp. B1-46 [CP088247]
2327722
2327797
+
Thr
TGT
-
¡û
>W2110752826
NKUI01000099
Alphaproteobacteria
Methylorubrum zatmanii LMG 6087 [NKUI]
27759
27834
+
Thr
TGT
[ENA]
¡û
>W2110762725
RCVL01000016
Alphaproteobacteria
Methylorubrum sp. DB1722 [RCVL]
30597
30522
-
Thr
TGT
[ENA]
¡û
>W1510081379
CDSD01000115
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
2548
2623
+
Thr
TGT
[ENA]
¡û
>C231516214
CP107532
Alphaproteobacteria
Methylobacterium sp. FF17 [CP107532]
1398696
1398771
+
Thr
TGT
-
¡û
>C231527951
CP110130
Alphaproteobacteria
Methylorubrum extorquens NBC_00404 [CP110130]
1825764
1825839
+
Thr
TGT
-
¡û
>C231528033
CP110131
Alphaproteobacteria
Methylorubrum extorquens NBC_00036 [CP110131]
4723167
4723092
-
Thr
TGT
-
¡û
>C241180450
CP073633
Alphaproteobacteria
Methylorubrum extorquens ATCC 55366 [CP073633]
2599006
2599081
+
Thr
TGT
-
¡û
>C241181958
CP077638
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP077638]
2394698
2394773
+
Thr
TGT
-
¡û
>W2310012742
BPQD01000007
Alphaproteobacteria
Methylobacterium adhaesivum DSM 17169 [BPQD]
411129
411054
-
Thr
TGT
[ENA]
¡û
>W2310013130
BPQL01000149
Alphaproteobacteria
Methylobacterium goesingense DSM 21331 [BPQL]
741
816
+
Thr
TGT
[ENA]
¡û
>W2310013191
BPQN01000007
Alphaproteobacteria
Methylobacterium haplocladii DSM 24195 [BPQN]
53367
53442
+
Thr
TGT
[ENA]
¡û
>W2310013796
BPRA01000006
Alphaproteobacteria
Methylobacterium thuringiense DSM 23674 [BPRA]
102110
102035
-
Thr
TGT
[ENA]
¡û
>W2310013882
BPRC01000008
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
31809
31734
-
Thr
TGT
[ENA]
¡û
>W2310013922
BPRD01000126
Alphaproteobacteria
Methylorubrum podarium DSM 15083 [BPRD]
4908
4983
+
Thr
TGT
[ENA]
¡û
>W2310013966
BPRE01000005
Alphaproteobacteria
Methylorubrum suomiense DSM 14458 [BPRE]
71932
72007
+
Thr
TGT
[ENA]
¡û
>W2310014035
BPRF01000028
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BPRF]
63818
63893
+
Thr
TGT
[ENA]
¡û
>W2310026302
BSPG01000024
Alphaproteobacteria
Methylobacterium brachythecii NBRC 107710 [BSPG]
41794
41719
-
Thr
TGT
[ENA]
¡û
>C161004962
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
2193438
2193513
+
Thr
TGT
[Ensembl]
¡û
>W1610043181
BAZP01000546
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1614
1539
-
Thr
TGT
[ENA]
¡û
>W121010670
AGJK01000056
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
16284
16359
+
Thr
TGT
[ENA]
¡û
>W1610735216
LMMI01000012
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
7630
7705
+
Thr
TGT
[ENA]
¡û
>W1610735326
LMMK01000050
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
61043
61118
+
Thr
TGT
[ENA]
¡û
>W1610735359
LMML01000028
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
478293
478218
-
Thr
TGT
[ENA]
¡û
>W1610735464
LMMN01000056
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
866
791
-
Thr
TGT
[ENA]
¡û
>W1610735587
LMMQ01000029
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
231070
231145
+
Thr
TGT
[ENA]
¡û
>W1610735783
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
555532
555607
+
Thr
TGT
[ENA]
¡û
>W1610735905
LMMW01000024
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
16605
16680
+
Thr
TGT
[ENA]
¡û
>W1610735927
LMMX01000001
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
619741
619666
-
Thr
TGT
[ENA]
¡û
>W1610736055
LMMZ01000038
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
158209
158134
-
Thr
TGT
[ENA]
¡û
>W1610736253
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
1003505
1003580
+
Thr
TGT
[ENA]
¡û
>W1610736341
LMNG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
193441
193516
+
Thr
TGT
[ENA]
¡û
>W1610736489
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
237822
237897
+
Thr
TGT
[ENA]
¡û
>W1610736608
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
385850
385925
+
Thr
TGT
[ENA]
¡û
>W1610736695
LMNN01000019
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
30892
30817
-
Thr
TGT
[ENA]
¡û
>W1610736789
LMNP01000030
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
31129
31054
-
Thr
TGT
[ENA]
¡û
>W1610736842
LMNQ01000040
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
30949
30874
-
Thr
TGT
[ENA]
¡û
>W1610736909
LMNS01000011
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
14259
14334
+
Thr
TGT
[ENA]
¡û
>W1610736984
LMNU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
657740
657665
-
Thr
TGT
[ENA]
¡û
>W1610740665
LMQV01000042
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
270211
270286
+
Thr
TGT
[ENA]
¡û
>W1610740887
LMRA01000023
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
6463
6388
-
Thr
TGT
[ENA]
¡û
>W1610741042
LMRE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
580293
580218
-
Thr
TGT
[ENA]
¡û
>W1610741535
LMRM01000015
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
61068
61143
+
Thr
TGT
[ENA]
¡û
>W1610917626
LSNC01000124
Alphaproteobacteria
Methylorubrum populi [LSNC]
208148
208223
+
Thr
TGT
[ENA]
¡û
>W1611024550
LYXZ01000089
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
5488
5413
-
Thr
TGT
[ENA]
¡û
>W1710040341
BAZP01000546
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1614
1539
-
Thr
TGT
[ENA]
¡û
>W1710563199
FOPM01000026
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
27567
27492
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
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Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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