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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266752 (75 seq.)
>W1710777848
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1835910
1835985
+
Arg
CCT
[ENA]
¡û
>W1710892064
LNDJ01000069
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
2350
2275
-
Arg
CCT
[ENA]
¡û
>W1711227874
LXWA01000033
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
39377
39452
+
Arg
CCT
[ENA]
¡û
>W1711683006
MRYC01000011
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
56414
56339
-
Arg
CCT
[ENA]
¡û
>C171019153
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
435589
435514
-
Arg
CCT
-
¡û
>C171131066
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
1703725
1703800
+
Arg
CCT
-
¡û
>C015808
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1353903
1353978
+
Arg
CCT
[Ensembl]
¡û
>C015993
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1565834
1565759
-
Arg
CCT
[Ensembl]
¡û
>WENV180101068
OAOU01000126
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
14100
14175
+
Arg
CCT
[ENA]
¡û
>w003214
AADI01000002
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
374125
374048
-
Arg
CCT
[ENA]
¡û
>W141195682
AYUI01000047
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
187086
187011
-
Arg
CCT
[ENA]
¡û
>W141200013
AYXN01000041
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
187081
187006
-
Arg
CCT
[ENA]
¡û
>C08007205
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1353903
1353978
+
Arg
CCT
[Ensembl]
¡û
>W141234104
BAWJ01000014
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
43156
43081
-
Arg
CCT
[ENA]
¡û
>WENV170014749
AYSL01008994
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
1373
1298
-
Arg
CCT
[ENA]
¡û
>WENV170121527
CENM01039247
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1994
1919
-
Arg
CCT
[ENA]
¡û
>WENV170243630
CEQO01163233
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1091
1016
-
Arg
CCT
[ENA]
¡û
>WENV170488035
CEVO01116303
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1846
1921
+
Arg
CCT
[ENA]
¡û
>WENV170539383
CEWR01193352
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
263
188
-
Arg
CCT
[ENA]
¡û
>WENV170581353
FUFK010061614
[FUFK] metagenome; unknown
15623
15548
-
Arg
CCT
[ENA]
¡û
>WENV170594870
FUFK011512015
[FUFK] metagenome; unknown
184
259
+
Arg
CCT
[ENA]
¡û
>WENV170824497
MDSY01077175
[MDSY] marine metagenome; seawater
3419
3494
+
Arg
CCT
[ENA]
¡û
>C181056070
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
263258
263183
-
Arg
CCT
-
¡û
>W09103304
AAJC01000003
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
119384
119459
+
Arg
CCT
[ENA]
¡û
>W1911397546
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
311543
311618
+
Arg
CCT
[ENA]
¡û
>W1810157371
PJBX01000140
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
3341
3266
-
Arg
CCT
[ENA]
¡û
>W1810596388
QGGM01000002
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
51753
51678
-
Arg
CCT
[ENA]
¡û
>W2011134354
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
311543
311618
+
Arg
CCT
[ENA]
¡û
>W2012071534
VKLR01000026
Gammaproteobacteria
Psychrobacter sp. YGAH215 [VKLR]
40330
40405
+
Arg
CCT
[ENA]
¡û
>W2110105763
CAJGYS010000001
Gammaproteobacteria
Psychrobacter faecalis [CAJGYS]
1355790
1355715
-
Arg
CCT
[ENA]
¡û
>W2110105936
CAJGYV010000001
Gammaproteobacteria
Psychrobacter ciconiae [CAJGYV]
67723
67648
-
Arg
CCT
[ENA]
¡û
>W2110105979
CAJGYX010000001
Gammaproteobacteria
Psychrobacter cibarius [CAJGYX]
237539
237612
+
Arg
CCT
[ENA]
¡û
>W2110106010
CAJGYX010000005
Gammaproteobacteria
Psychrobacter cibarius [CAJGYX]
109
36
-
Arg
CCT
[ENA]
¡û
>W2110106069
CAJGYZ010000001
Gammaproteobacteria
Psychrobacter cryohalolentis [CAJGYZ]
368998
369073
+
Arg
CCT
[ENA]
¡û
>W2110106185
CAJGZB010000038
Gammaproteobacteria
Psychrobacter cibarius [CAJGZB]
11216
11291
+
Arg
CCT
[ENA]
¡û
>W2110106280
CAJGZE010000001
Gammaproteobacteria
Psychrobacter arcticus [CAJGZE]
93899
93974
+
Arg
CCT
[ENA]
¡û
>W2110106369
CAJGZG010000025
Gammaproteobacteria
Psychrobacter faecalis [CAJGZG]
43014
43089
+
Arg
CCT
[ENA]
¡û
>W2110106422
CAJGZH010000002
Gammaproteobacteria
Psychrobacter glacincola [CAJGZH]
268060
267985
-
Arg
CCT
[ENA]
¡û
>W2110106602
CAJGZM010000001
Gammaproteobacteria
Psychrobacter immobilis [CAJGZM]
39001
39076
+
Arg
CCT
[ENA]
¡û
>W2110106804
CAJGZQ010000015
Gammaproteobacteria
Psychrobacter immobilis [CAJGZQ]
465
390
-
Arg
CCT
[ENA]
¡û
>W2110106859
CAJGZR010000038
Gammaproteobacteria
Psychrobacter immobilis [CAJGZR]
284
209
-
Arg
CCT
[ENA]
¡û
>W2110106875
CAJGZS010000003
Gammaproteobacteria
Psychrobacter immobilis [CAJGZS]
466
391
-
Arg
CCT
[ENA]
¡û
>W2110107012
CAJGZV010000001
Gammaproteobacteria
Psychrobacter immobilis [CAJGZV]
1832004
1832079
+
Arg
CCT
[ENA]
¡û
>W2110107138
CAJGZY010000002
Gammaproteobacteria
Psychrobacter immobilis [CAJGZY]
16587
16512
-
Arg
CCT
[ENA]
¡û
>W2110107335
CAJHAC010000027
Gammaproteobacteria
Psychrobacter immobilis [CAJHAC]
19480
19555
+
Arg
CCT
[ENA]
¡û
>W2110107384
CAJHAD010000019
Gammaproteobacteria
Psychrobacter immobilis [CAJHAD]
56699
56774
+
Arg
CCT
[ENA]
¡û
>W2110107489
CAJHAG010000001
Gammaproteobacteria
Psychrobacter maritimus [CAJHAG]
121926
122001
+
Arg
CCT
[ENA]
¡û
>W2110107559
CAJHAH010000004
Gammaproteobacteria
Psychrobacter luti [CAJHAH]
400994
400919
-
Arg
CCT
[ENA]
¡û
>W2110107760
CAJHAM010000007
Gammaproteobacteria
Psychrobacter oceani [CAJHAM]
14506
14431
-
Arg
CCT
[ENA]
¡û
>W2110107871
CAJHAO010000007
Gammaproteobacteria
Psychrobacter pacificensis [CAJHAO]
87951
87876
-
Arg
CCT
[ENA]
¡û
>W2110108117
CAJHAU010000001
Gammaproteobacteria
Psychrobacter pulmonis [CAJHAU]
2711896
2711821
-
Arg
CCT
[ENA]
¡û
>W2110108167
CAJHAV010000007
Gammaproteobacteria
Psychrobacter sp. LFX-11D [CAJHAV]
124611
124686
+
Arg
CCT
[ENA]
¡û
>W2110108324
CAJHAZ010000002
Gammaproteobacteria
Psychrobacter sp. 1044 [CAJHAZ]
36018
36093
+
Arg
CCT
[ENA]
¡û
>W2110108563
CAJHBE010000011
Gammaproteobacteria
Psychrobacter sp. DD43 [CAJHBE]
62367
62292
-
Arg
CCT
[ENA]
¡û
>W2110108936
CAJHBM010000011
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [CAJHBM]
67710
67785
+
Arg
CCT
[ENA]
¡û
>W2110108977
CAJHBN010000019
Gammaproteobacteria
Psychrobacter sp. NC44 [CAJHBN]
40343
40416
+
Arg
CCT
[ENA]
¡û
>W2110168380
JABASQ010000029
Gammaproteobacteria
Psychrobacter cibarius DSM 16327 [JABASQ]
13966
14041
+
Arg
CCT
[ENA]
¡û
>W2110168500
JABAST010000025
Gammaproteobacteria
Psychrobacter faecalis DSM 14664 [JABAST]
42992
43067
+
Arg
CCT
[ENA]
¡û
>W2110188828
JABUZI010000063
Gammaproteobacteria
Psychrobacter faecalis H5 [JABUZI]
17061
17136
+
Arg
CCT
[ENA]
¡û
>W2110260785
JACSQR010000025
Gammaproteobacteria
Psychrobacter sp. Sa4CVA2 [JACSQR]
2068
1993
-
Arg
CCT
[ENA]
¡û
>W2110315735
JADGFW010000006
Gammaproteobacteria
Psychrobacter sp. M9-54-1 [JADGFW]
275637
275712
+
Arg
CCT
[ENA]
¡û
>W2110456266
JAEVFH010000001
Gammaproteobacteria
Psychrobacter pacificensis E23 [JAEVFH]
142383
142458
+
Arg
CCT
[ENA]
¡û
>C211001704
AP019516
Gammaproteobacteria
Psychrobacter sp. KH172YL61 [AP019516]
1625858
1625933
+
Arg
CCT
-
¡û
>C211132639
CP060390
Gammaproteobacteria
Psychrobacter sp. KCTC 72983 [CP060390]
2844244
2844319
+
Arg
CCT
-
¡û
>C231502894
CP106752
Gammaproteobacteria
Psychrobacter sp. SC65A.3 [CP106752]
1470220
1470295
+
Arg
CCT
-
¡û
>C241302083
CP132595
Gammaproteobacteria
Psychrobacter sp. van23A [CP132595]
1580638
1580711
+
Arg
CCT
-
¡û
>W2310025161
BSOK01000048
Gammaproteobacteria
Psychrobacter pacificensis NBRC 103191 [BSOK]
14301
14226
-
Arg
CCT
[ENA]
¡û
>W1610112419
CZJV02000123
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
195468
195393
-
Arg
CCT
[ENA]
¡û
>W1610632758
LIQB01000012
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
41283
41208
-
Arg
CCT
[ENA]
¡û
>W1610642034
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1835910
1835985
+
Arg
CCT
[ENA]
¡û
>W1610752330
LNDJ01000069
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
2350
2275
-
Arg
CCT
[ENA]
¡û
>W1611011838
LXWA01000033
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
39377
39452
+
Arg
CCT
[ENA]
¡û
>W1710115123
CZJV02000123
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
195468
195393
-
Arg
CCT
[ENA]
¡û
>W1710513820
FNAL01000017
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
14460
14385
-
Arg
CCT
[ENA]
¡û
>W1710767190
LIQB01000012
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
41283
41208
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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