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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266753 (84 seq.)
>W1710861243
LMDL01000045
Actinomycetota
Streptomyces sp. Root369 [LMDL]
477022
476949
-
Ala
GGC
[ENA]
¡û
>W1710884276
LMWM01000003
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
513450
513523
+
Ala
GGC
[ENA]
¡û
>W1710884434
LMWO01000023
Actinomycetota
Streptomyces canus ciscaucasicus [LMWO]
71997
71924
-
Ala
GGC
[ENA]
¡û
>W1710884815
LMWU01000009
Actinomycetota
Streptomyces canus [LMWU]
208010
208083
+
Ala
GGC
[ENA]
¡û
>W1711455777
MJAH01000002
Actinomycetota
Streptomyces sp. LUP47B LUP47b [MJAH]
39094
39167
+
Ala
GGC
[ENA]
¡û
>W1711790712
MWIF01000051
Actinomycetota
Streptomyces sp. NRRL B-24085 [MWIF]
82496
82569
+
Ala
GGC
[ENA]
¡û
>W131185382
ARTQ01000141
Actinomycetota
Streptomyces canus 299MFChir4.1 [ARTQ]
62358
62283
-
Ala
GGC
[ENA]
¡û
>W131185481
ARTS01000044
Actinomycetota
Streptomyces sp. 351MFTsu5.1 [ARTS]
194198
194271
+
Ala
GGC
[ENA]
¡û
>W08006776
ABJJ01000218
Actinomycetota
Streptomyces sviceus ATCC 29083 [ABJJ]
14315
14388
+
Ala
GGC
[ENA]
¡û
>WENV170329328
CESV01100972
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
139
213
+
Ala
GGC
[ENA]
¡û
>WENV170413955
CEUK01163313
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
399
326
-
Ala
GGC
[ENA]
¡û
>WENV170531338
CEWK01124383
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1728
1801
+
Ala
GGC
[ENA]
¡û
>WENV170848738
MDTA01084056
[MDTA] marine metagenome; seawater
3518
3592
+
Ala
GGC
[ENA]
¡û
>WENV170861195
MDTB01060942
[MDTB] marine metagenome; seawater
24823
24897
+
Ala
GGC
[ENA]
¡û
>WENV170888728
MDTC01262854
[MDTC] marine metagenome; seawater
750
823
+
Ala
GGC
[ENA]
¡û
>WENV170911197
MDTE01102311
[MDTE] marine metagenome; seawater
4492
4419
-
Ala
GGC
[ENA]
¡û
>WENV170914131
MDTE01143732
[MDTE] marine metagenome; seawater
24062
24135
+
Ala
GGC
[ENA]
¡û
>WENV170944374
MDTG01413681
[MDTG] marine metagenome; seawater
32726
32652
-
Ala
GGC
[ENA]
¡û
>C181148918
CP027306
Actinomycetota
Streptomyces atratus SCSIO_ZH16 [CP027306]
3058217
3058144
-
Ala
GGC
-
¡û
>C181148919
CP027306
Actinomycetota
Streptomyces atratus SCSIO_ZH16 [CP027306]
3055677
3055604
-
Ala
GGC
-
¡û
>C191083758
CP031969
Actinomycetota
Streptomyces sp. CC0208 [CP031969]
5947967
5948040
+
Ala
GGC
-
¡û
>W141755092
JNWJ01000013
Actinomycetota
Streptomyces yerevanensis [JNWJ]
13262
13337
+
Ala
GGC
[ENA]
¡û
>W141755093
JNWJ01000013
Actinomycetota
Streptomyces yerevanensis [JNWJ]
14164
14237
+
Ala
GGC
[ENA]
¡û
>W141763332
JOBZ01000359
Actinomycetota
Streptomyces sp. NRRL WC-3774 [JOBZ]
7205
7132
-
Ala
GGC
[ENA]
¡û
>W141767964
JOEY01000013
Actinomycetota
Streptomyces fulvoviolaceus [JOEY]
91891
91964
+
Ala
GGC
[ENA]
¡û
>W141816382
JQJV01000012
Actinomycetota
Streptomyces mirabilis [JQJV]
101334
101407
+
Ala
GGC
[ENA]
¡û
>W1911775119
QXMJ01000146
Actinomycetota
Streptomyces sp. NEAU-SSA 1 [QXMJ]
34907
34834
-
Ala
GGC
[ENA]
¡û
>SRA1012403
SRR020493.298193
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
187
114
-
Ala
GGC
[SRA]
>W2010466170
JAAGLY010000036
Actinomycetota
Streptomyces sp. SID13726 [JAAGLY]
39810
39883
+
Ala
GGC
[ENA]
¡û
>W2010494418
JAAKZX010000070
Actinomycetota
Streptomyces sp. YC419 [JAAKZX]
13145
13218
+
Ala
GGC
[ENA]
¡û
>W2010494419
JAAKZX010000070
Actinomycetota
Streptomyces sp. YC419 [JAAKZX]
14000
14073
+
Ala
GGC
[ENA]
¡û
>W2010494471
JAAKZY010000057
Actinomycetota
Streptomyces sp. HC44 [JAAKZY]
37324
37397
+
Ala
GGC
[ENA]
¡û
>W2010494472
JAAKZY010000057
Actinomycetota
Streptomyces sp. HC44 [JAAKZY]
40567
40640
+
Ala
GGC
[ENA]
¡û
>W2011328676
QXMJ01000146
Actinomycetota
Streptomyces sp. NEAU-SSA 1 [QXMJ]
34907
34834
-
Ala
GGC
[ENA]
¡û
>W2011434311
RJKZ01000001
Actinomycetota
Streptomyces griseorubiginosus SAI-142 [RJKZ]
3257968
3257895
-
Ala
GGC
[ENA]
¡û
>W2011453257
RKQH01000001
Actinomycetota
Streptomyces sp. W SAI-097 [RKQH]
3446461
3446388
-
Ala
GGC
[ENA]
¡û
>W2011487221
RSAJ01000211
Actinomycetota
Streptomyces sp. RP5T [RSAJ]
6400
6473
+
Ala
GGC
[ENA]
¡û
>W2011652009
SNZM01000003
Actinomycetota
Streptomyces sp. BK561 [SNZM]
575714
575787
+
Ala
GGC
[ENA]
¡û
>W2011673577
SPQF01000001
Actinomycetota
Streptomyces sp. IB201691-2A2 [SPQF]
573110
573037
-
Ala
GGC
[ENA]
¡û
>W2011970539
VBZC01000088
Actinomycetota
Streptomyces sp. NEAU-C151 [VBZC]
13075
13002
-
Ala
GGC
[ENA]
¡û
>W2011970540
VBZC01000088
Actinomycetota
Streptomyces sp. NEAU-C151 [VBZC]
9895
9822
-
Ala
GGC
[ENA]
¡û
>W2011973249
VCHX02000146
Actinomycetota
Streptomyces sp. NEAU-SSA 1 [VCHX]
34907
34834
-
Ala
GGC
[ENA]
¡û
>W2012065726
VJZE01000032
Actinomycetota
Streptomyces phyllanthi TISTR 2346 [VJZE]
24205
24278
+
Ala
GGC
[ENA]
¡û
>W2012195999
VWMY01000042
Actinomycetota
Streptomyces sp. TRM68295 [VWMY]
33458
33385
-
Ala
GGC
[ENA]
¡û
>W2012196000
VWMY01000042
Actinomycetota
Streptomyces sp. TRM68295 [VWMY]
29122
29049
-
Ala
GGC
[ENA]
¡û
>W2012475624
WWIM01000001
Actinomycetota
Streptomyces sp. SID5470 [WWIM]
3261706
3261633
-
Ala
GGC
[ENA]
¡û
>W2110035530
BMPQ01000001
Actinomycetota
Streptomyces flaveus JCM 3035 [BMPQ]
189764
189690
-
Ala
GGC
[ENA]
¡û
>W2110035531
BMPQ01000001
Actinomycetota
Streptomyces flaveus JCM 3035 [BMPQ]
188881
188808
-
Ala
GGC
[ENA]
¡û
>W2110038416
BMRN01000002
Actinomycetota
Streptomyces atratus JCM 3386 [BMRN]
411360
411433
+
Ala
GGC
[ENA]
¡û
>W2110038417
BMRN01000002
Actinomycetota
Streptomyces atratus JCM 3386 [BMRN]
414638
414711
+
Ala
GGC
[ENA]
¡û
>W2110043229
BMUM01000001
Actinomycetota
Streptomyces umbrinus JCM 4521 [BMUM]
1783555
1783628
+
Ala
GGC
[ENA]
¡û
>W2110054058
BNCC01000002
Actinomycetota
Streptomyces umbrinus JCM 4958 [BNCC]
590503
590576
+
Ala
GGC
[ENA]
¡û
>W2110641130
JAHRIB010000170
Actinomycetota
Streptomyces sp. BV286 [JAHRIB]
24463
24390
-
Ala
GGC
[ENA]
¡û
>C211180517
CP063808
Actinomycetota
Streptomyces sp. A2-16 [CP063808]
8216879
8216806
-
Ala
GGC
-
¡û
>C211233574
CP066831
Actinomycetota
Streptomyces sp. ZYC-3 [CP066831]
7186680
7186753
+
Ala
GGC
-
¡û
>C231253362
CP088911
Actinomycetota
Yinghuangia sp. ASG 101 [CP088911]
5417528
5417601
+
Ala
GGC
-
¡û
>C231253371
CP088911
Actinomycetota
Yinghuangia sp. ASG 101 [CP088911]
5418460
5418387
-
Ala
GGC
-
¡û
>C231558148
CP114283
Actinomycetota
Streptomyces aurantiacus Qhu-M197 [CP114283]
1450745
1450818
+
Ala
GGC
-
¡û
>C241199417
CP107755
Actinomycetota
Streptomyces pseudovenezuelae NBC_00598 [CP107755]
6480542
6480615
+
Ala
GGC
-
¡û
>C241199682
CP107766
Actinomycetota
Streptomyces griseorubiginosus NBC_00587 [CP107766]
6355989
6356062
+
Ala
GGC
-
¡û
>C241199749
CP107768
Actinomycetota
Streptomyces griseorubiginosus NBC_00586 [CP107768]
6356702
6356775
+
Ala
GGC
-
¡û
>C241199816
CP107772
Actinomycetota
Streptomyces sp. NBC_00582 [CP107772]
7195953
7196026
+
Ala
GGC
-
¡û
>C241205898
CP107986
Actinomycetota
Streptomyces canus NBC_00350 [CP107986]
3813152
3813079
-
Ala
GGC
-
¡û
>C241206417
CP108011
Actinomycetota
Streptomyces phaeochromogenes NBC_00333 [CP108011]
8699665
8699738
+
Ala
GGC
-
¡û
>C241207312
CP108346
Actinomycetota
Streptomyces canus NBC_01360 [CP108346]
7104956
7105029
+
Ala
GGC
-
¡û
>C241209557
CP108454
Actinomycetota
Streptomyces sp. NBC_01268 [CP108454]
2786999
2786926
-
Ala
GGC
-
¡û
>C241209558
CP108454
Actinomycetota
Streptomyces sp. NBC_01268 [CP108454]
2782600
2782527
-
Ala
GGC
-
¡û
>C241212432
CP108992
Actinomycetota
Streptomyces pseudovenezuelae NBC_00713 [CP108992]
6401921
6401994
+
Ala
GGC
-
¡û
>C241212612
CP108995
Actinomycetota
Streptomyces canus NBC_00710 [CP108995]
3766369
3766296
-
Ala
GGC
-
¡û
>C241213118
CP109011
Actinomycetota
Streptomyces pseudovenezuelae NBC_00686 [CP109011]
3529442
3529369
-
Ala
GGC
-
¡û
>C241213186
CP109012
Actinomycetota
Streptomyces canus NBC_00685 [CP109012]
4212549
4212476
-
Ala
GGC
-
¡û
>C241213525
CP109024
Actinomycetota
Streptomyces pseudovenezuelae NBC_00666 [CP109024]
6205084
6205157
+
Ala
GGC
-
¡û
>C241213766
CP109030
Actinomycetota
Streptomyces pseudovenezuelae NBC 00661 [CP109030]
3508401
3508328
-
Ala
GGC
-
¡û
>C241213852
CP109055
Actinomycetota
Streptomyces sp. NBC_01304 [CP109055]
7170746
7170819
+
Ala
GGC
-
¡û
>C241213853
CP109055
Actinomycetota
Streptomyces sp. NBC_01304 [CP109055]
7175399
7175472
+
Ala
GGC
-
¡û
>C241216535
CP109447
Actinomycetota
Streptomyces canus NBC_01475 [CP109447]
3955322
3955249
-
Ala
GGC
-
¡û
>C241243177
CP121214
Actinomycetota
Streptomyces atratus MJM3502 [CP121214]
3538367
3538294
-
Ala
GGC
-
¡û
>C241243178
CP121214
Actinomycetota
Streptomyces atratus MJM3502 [CP121214]
3535119
3535046
-
Ala
GGC
-
¡û
>W1610633821
LIQZ01000014
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
15859
15786
-
Ala
GGC
[ENA]
¡û
>W1610723589
LMDL01000045
Actinomycetota
Streptomyces sp. Root369 [LMDL]
477022
476949
-
Ala
GGC
[ENA]
¡û
>W1610746202
LMWM01000003
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
513450
513523
+
Ala
GGC
[ENA]
¡û
>W1610746360
LMWO01000023
Actinomycetota
Streptomyces canus ciscaucasicus [LMWO]
71997
71924
-
Ala
GGC
[ENA]
¡û
>W1610746741
LMWU01000009
Actinomycetota
Streptomyces canus [LMWU]
208010
208083
+
Ala
GGC
[ENA]
¡û
>W1710768253
LIQZ01000014
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
15859
15786
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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