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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266754 (26 seq.)
>W1711584902
MNZA01000179
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_44_21 [MNZA]
9939
9867
-
Val
TAC
[ENA]
¡û
>WENV180261544
OBEQ011304986
[OBEQ] groundwater metagenome; groundwater
190
117
-
Val
TAC
[ENA]
¡û
>W141038203
ALVK01000005
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
15261
15189
-
Val
TAC
[ENA]
¡û
>W141038665
ALWB01000068
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
18557
18629
+
Val
TAC
[ENA]
¡û
>WENV170576380
FRDC01000507
[FRDC] freshwater metagenome; water
87281
87356
+
Val
TAC
[ENA]
¡û
>WENV170640258
JFJP01015364
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2976
2904
-
Val
TAC
[ENA]
¡û
>C191000329
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
1478640
1478568
-
Val
TAC
-
¡û
>W1910872450
NDHW01000214
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
6297
6225
-
Val
TAC
[ENA]
¡û
>W1810053458
PDDM01000023
Cyanobacteriota
Pseudanabaena sp. BC1403 [PDDM]
28075
28003
-
Val
TAC
[ENA]
¡û
>W2010572307
JAAVJL010000003
Cyanobacteriota
Pseudanabaena yagii GIHE-NHR1 [JAAVJL]
5025
4953
-
Val
TAC
[ENA]
¡û
>W2010941153
NDHW01000214
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
6297
6225
-
Val
TAC
[ENA]
¡û
>W2011555648
SELU01000011
Cyanobacteriota
Pseudanabaena sp. UWO310 [SELU]
32665
32593
-
Val
TAC
[ENA]
¡û
>W2011604542
SJEE01000040
Cyanobacteriota
Pseudanabaena sp. UWO311 [SJEE]
22136
22208
+
Val
TAC
[ENA]
¡û
>W2110011515
BBJB01000085
Cyanobacteriota
Pseudanabaena sp. lw0831 [BBJB]
12088
12016
-
Val
TAC
[ENA]
¡û
>W2110229105
JACJPY010000054
Cyanobacteriota
Pseudanabaena sp. FACHB-1277 [JACJPY]
3032
3104
+
Val
TAC
[ENA]
¡û
>W2110229166
JACJQA010000028
Cyanobacteriota
Pseudanabaena sp. FACHB-1998 [JACJQA]
57256
57328
+
Val
TAC
[ENA]
¡û
>W2110229187
JACJQB010000001
Cyanobacteriota
Pseudanabaena sp. FACHB-723 [JACJQB]
294510
294582
+
Val
TAC
[ENA]
¡û
>W2110230376
JACJQY010000056
Cyanobacteriota
Pseudanabaena sp. FACHB-1050 [JACJQY]
8682
8610
-
Val
TAC
[ENA]
¡û
>C231436845
CP101416
Cyanobacteriota
Pseudanabaena sp. Chao 1811 [CP101416]
4516947
4517019
+
Val
TAC
-
¡û
>C241192178
CP097329
Cyanobacteriota
Pseudanabaena mucicola str. Chao 1806 [CP097329]
715364
715292
-
Val
TAC
-
¡û
>C241220784
CP112874
Cyanobacteriota
Pseudanabaena galeata CCNP1313 [CP112874]
500165
500237
+
Val
TAC
-
¡û
>C131004423
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
944801
944873
+
Val
TAC
[Ensembl]
¡û
>W1610634125
LIRE01000066
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
4980
5052
+
Val
TAC
[ENA]
¡û
>W1610634127
LIRE01000102
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
3233
3305
+
Val
TAC
[ENA]
¡û
>W1710768502
LIRE01000066
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
4980
5052
+
Val
TAC
[ENA]
¡û
>W1710768504
LIRE01000102
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
3233
3305
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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