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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266818 (29 seq.)
>WENV180300036
OBJD01004987
[OBJD] human gut metagenome; human gut
5
80
+
Gly
GCC
[ENA]
¡û
>WENV180546652
OCIU01002907
[OCIU] human gut metagenome; human gut
9204
9129
-
Gly
GCC
[ENA]
¡û
>WENV180970655
ODUU01005131
[ODUU] human metagenome; G_DNA_Stool
6231
6306
+
Gly
GCC
[ENA]
¡û
>WENV181437314
OGDF01089122
[OGDF] human gut metagenome; human gut
478
403
-
Gly
GCC
[ENA]
¡û
>WENV181691271
OGOZ01004212
[OGOZ] human gut metagenome; faeces
2223
2148
-
Gly
GCC
[ENA]
¡û
>WENV181718560
OGPT01025661
[OGPT] human gut metagenome; faeces
1140
1215
+
Gly
GCC
[ENA]
¡û
>WENV181742353
OGQK01035102
[OGQK] human gut metagenome; faeces
113
38
-
Gly
GCC
[ENA]
¡û
>WENV181772430
OGRD01003390
[OGRD] human gut metagenome; faeces
3104
3179
+
Gly
GCC
[ENA]
¡û
>WENV181803568
OGSD01023377
[OGSD] human gut metagenome; faeces
318
393
+
Gly
GCC
[ENA]
¡û
>WENV182417665
OIGD01046257
[OIGD] human gut metagenome; human gut
856
781
-
Gly
GCC
[ENA]
¡û
>WENV182616141
OJKC01016448
[OJKC] metagenome; faeces
1279
1354
+
Gly
GCC
[ENA]
¡û
>WENV182617200
OJKC01130517
[OJKC] metagenome; faeces
304
229
-
Gly
GCC
[ENA]
¡û
>WENV182662214
OJMN01020636
[OJMN] human gut metagenome; feces
197
272
+
Gly
GCC
[ENA]
¡û
>WENV183040124
OLGB01045081
[OLGB] human gut metagenome; faeces
887
962
+
Gly
GCC
[ENA]
¡û
>WENV183041656
OLGD01001115
[OLGD] human gut metagenome; faeces
118
193
+
Gly
GCC
[ENA]
¡û
>WENV183045715
OLGE01021417
[OLGE] human gut metagenome; faeces
1750
1825
+
Gly
GCC
[ENA]
¡û
>WENV183161936
OLOV01030915
[OLOV] human gut metagenome; faeces
1314
1239
-
Gly
GCC
[ENA]
¡û
>WENV183207211
OLQA01008534
[OLQA] human gut metagenome; faeces
4991
4916
-
Gly
GCC
[ENA]
¡û
>WENV183400529
OLZR01014463
[OLZR] human gut metagenome; feces
1345
1270
-
Gly
GCC
[ENA]
¡û
>WENV183405703
OLZZ01043105
[OLZZ] human gut metagenome; feces
562
487
-
Gly
GCC
[ENA]
¡û
>WENV183424531
OMBH01001040
[OMBH] human gut metagenome; feces
199
124
-
Gly
GCC
[ENA]
¡û
>WENV183471382
OMEN01001649
[OMEN] human gut metagenome; feces
634
709
+
Gly
GCC
[ENA]
¡û
>WENV183507124
OMGY01008206
[OMGY] human gut metagenome; human gut
1207
1132
-
Gly
GCC
[ENA]
¡û
>WENV183611799
OODT01001307
[OODT] human gut metagenome; human gut
555
480
-
Gly
GCC
[ENA]
¡û
>WENV183648996
OQVS01074943
[OQVS] human gut metagenome; human gut
12
87
+
Gly
GCC
[ENA]
¡û
>WENV170044288
CDYX01004739
[CDYX] gut metagenome; human stools
692
767
+
Gly
GCC
[ENA]
¡û
>WENV170636450
JFBN01287050
[JFBN] chicken gut metagenome; ceca of Broiler chicken
75
150
+
Gly
GCC
[ENA]
¡û
>W2010345886
CADCAN010000009
Bacillota
Ruminococcaceae bacterium [CADCAN]
29344
29269
-
Gly
GCC
[ENA]
¡û
>W2010345889
CADCAN010000009
Bacillota
Ruminococcaceae bacterium [CADCAN]
28967
28892
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK