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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266818 (25 seq.)
>W1710899496
LNIZ01000010
Actinomycetota
Trueperella bernardiae [LNIZ]
23179
23104
-
Lys
CTT
[ENA]
¡û
>W1711184929
LWMY01000012
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
15651
15726
+
Lys
CTT
[ENA]
¡û
>W1711185074
LWNB01000029
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
4935
4860
-
Lys
CTT
[ENA]
¡û
>W1711772063
MVGS01000014
Actinomycetota
Trueperella pyogenes [MVGS]
25689
25764
+
Lys
CTT
[ENA]
¡û
>W141284194
JALQ01000045
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
26505
26580
+
Lys
CTT
[ENA]
¡û
>WENV183705569
PDWI01001837
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17585
17658
+
Lys
CTT
[ENA]
¢þ
>C181168801
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
498946
499021
+
Lys
CTT
-
¡û
>C181171267
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
115466
115541
+
Lys
CTT
-
¡û
>C181171494
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
533792
533867
+
Lys
CTT
-
¡û
>C181212680
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
1684219
1684292
+
Lys
CTT
-
¡û
>C181212681
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
1684355
1684428
+
Lys
CTT
-
¡û
>C191114728
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
370950
370875
-
Lys
CTT
-
¡û
>C191114751
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1662425
1662350
-
Lys
CTT
-
¡û
>C191114788
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1087195
1087270
+
Lys
CTT
-
¡û
>C191114836
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
2338005
2337930
-
Lys
CTT
-
¡û
>W1810085245
PESV01000002
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
22823
22748
-
Lys
CTT
[ENA]
¡û
>W1810187943
PKHY01000010
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
23385
23310
-
Lys
CTT
[ENA]
¡û
>W1810484111
QASM01000011
Actinomycetota
Trueperella pyogenes SH01 [QASM]
25664
25589
-
Lys
CTT
[ENA]
¡û
>C151026354
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
499007
499082
+
Lys
CTT
[Ensembl]
¡û
>C151096874
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
2240081
2240154
+
Lys
CTT
-
¡û
>C10100485
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
527837
527764
-
Lys
CTT
[Ensembl]
¡û
>C10100486
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
527701
527626
-
Lys
CTT
[Ensembl]
¡û
>W1511351096
JRMX01000015
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
196538
196613
+
Lys
CTT
[ENA]
¡û
>W1610759899
LNIZ01000010
Actinomycetota
Trueperella bernardiae [LNIZ]
23179
23104
-
Lys
CTT
[ENA]
¡û
>W1710743643
LGYI01000009
Actinomycetota
Trueperella bernardiae [LGYI]
23086
23011
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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