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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266820 (17 seq.)
>W1711772058
MVGS01000006
Actinomycetota
Trueperella pyogenes [MVGS]
2178
2103
-
Val
TAC
[ENA]
¡û
>W141284171
JALQ01000006
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
1485
1410
-
Val
TAC
[ENA]
¡û
>WENV183704817
PDWI01000664
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15473
15398
-
Val
TAC
[ENA]
¢þ
>C181168836
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
265730
265655
-
Val
TAC
-
¡û
>C181171295
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
2281945
2281872
-
Val
TAC
-
¡û
>C181171529
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
318019
317946
-
Val
TAC
-
¡û
>C191114691
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
589267
589342
+
Val
TAC
-
¡û
>C191114742
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1891291
1891366
+
Val
TAC
-
¡û
>C191114814
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
871422
871349
-
Val
TAC
-
¡û
>C191114820
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
128354
128427
+
Val
TAC
-
¡û
>W1910237003
FPJH01000009
Actinomycetota
Arcanobacterium urinimassiliense Marseille-P3248 [FPJH]
1942
1869
-
Val
TAC
[ENA]
¡û
>W1810085236
PESV01000002
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
237121
237194
+
Val
TAC
[ENA]
¡û
>W1810484096
QASM01000005
Actinomycetota
Trueperella pyogenes SH01 [QASM]
195903
195976
+
Val
TAC
[ENA]
¡û
>C151015790
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
1349711
1349638
-
Val
TAC
[Ensembl]
¡û
>C151026389
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
265749
265674
-
Val
TAC
[Ensembl]
¡û
>C151096879
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
1967252
1967179
-
Val
TAC
-
¡û
>W1511351070
JRMX01000011
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
10704
10629
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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