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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266850 (15 seq.)
>W1711434437
MIMZ01000023
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
241
316
+
Ala
CGC
[ENA]
¡û
>C171101791
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2674005
2674080
+
Ala
CGC
-
¡û
>C171101804
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3083309
3083384
+
Ala
CGC
-
¡û
>WENV180176931
OAWD01004694
[OAWD] human gut metagenome; faeces
221
296
+
Ala
CGC
[ENA]
¢þ
>WENV180498996
OCAG01014636
[OCAG] human gut metagenome; faeces
259
184
-
Ala
CGC
[ENA]
¢þ
>WENV180504525
OCAN01005237
[OCAN] human gut metagenome; faeces
2745
2670
-
Ala
CGC
[ENA]
¢þ
>WENV182405301
OIEV01002590
[OIEV] human gut metagenome; human gut
3400
3325
-
Ala
CGC
[ENA]
¢þ
>C191064417
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3798712
3798787
+
Ala
CGC
-
¡û
>C191064431
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
4280247
4280322
+
Ala
CGC
-
¡û
>C191219492
LR215983
Bacillota
Eubacterium limosum [LR215983]
289856
289931
+
Ala
CGC
-
¡û
>W1810871726
QUDF01000006
Bacillota
Eubacterium sp. AM05-23 [QUDF]
5990
5915
-
Ala
CGC
[ENA]
¡û
>C11108810
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
945527
945602
+
Ala
CGC
[Ensembl]
¡û
>C11108843
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2692777
2692702
-
Ala
CGC
[Ensembl]
¡û
>C161037804
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3252125
3252050
-
Ala
CGC
[Ensembl]
¡û
>C161037818
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2828936
2828861
-
Ala
CGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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