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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266880 (10 seq.)
>W141145908
AWVB01000024
Bacillota
Peptostreptococcaceae bacterium oral taxon 113 oral taxon 113 str. W5053 [AWVB]
665
740
+
Thr
TGT
[ENA]
¡û
>WENV170692674
LGOV01020958
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
204
279
+
Thr
TGT
[ENA]
¢þ
>C191119659
CP034118
Bacillota
Staphylospora marina SCSIO 07575 [CP034118]
2137200
2137125
-
Thr
TGT
-
¡û
>W1911680758
QJKK01000003
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
8148
8223
+
Thr
TGT
[ENA]
¡û
>W1911680821
QJKK01000022
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
710
635
-
Thr
TGT
[ENA]
¡û
>C131003059
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
997505
997580
+
Thr
TGT
[Ensembl]
¡û
>C131003073
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1008689
1008764
+
Thr
TGT
[Ensembl]
¡û
>C131003089
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1010278
1010353
+
Thr
TGT
[Ensembl]
¡û
>C131003120
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
3000977
3000902
-
Thr
TGT
[Ensembl]
¡û
>W1710565978
FORR01000003
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
5902
5977
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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