This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266880 (36 seq.)
>W1710783827
LJFZ01000019
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
75970
76045
+
Arg
TCT
[ENA]
¡û
>W1710787575
LJJX01000022
Actinomycetota
Frankia sp. CpI1-P [LJJX]
14963
14890
-
Arg
TCT
[ENA]
¡û
>W1710793206
LJPA01000008
Actinomycetota
Frankia sp. ACN1ag [LJPA]
123037
123110
+
Arg
TCT
[ENA]
¡û
>W1711053915
LRTJ01000047
Actinomycetota
Frankia casuarinae BR [LRTJ]
32534
32461
-
Arg
TCT
[ENA]
¡û
>W1711309655
MAQZ01000062
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
68477
68550
+
Arg
TCT
[ENA]
¡û
>W1711329001
MBLP01000054
Actinomycetota
Frankia sp. CgIS1 [MBLP]
60927
61000
+
Arg
TCT
[ENA]
¡û
>W1711603554
MOMD01000007
Actinomycetota
Frankia sp. CcI156 [MOMD]
9796
9723
-
Arg
TCT
[ENA]
¡û
>W1711678682
MRUJ01000057
Actinomycetota
Frankia sp. KB5 [MRUJ]
34247
34322
+
Arg
TCT
[ENA]
¡û
>W1711689389
MSEA01000079
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
14361
14434
+
Arg
TCT
[ENA]
¡û
>C009379
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
1979502
1979427
-
Arg
TCT
[Ensembl]
¡û
>C009577
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
1359258
1359186
-
Arg
TCT
[Ensembl]
¡û
>W141195290
AYTZ01000010
Actinomycetota
Frankia sp. CcI6 [AYTZ]
32093
32020
-
Arg
TCT
[ENA]
¡û
>W141403443
JDWE01000017
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
65250
65323
+
Arg
TCT
[ENA]
¡û
>W141427365
JENI01000021
Actinomycetota
Frankia casuarinae Thr [JENI]
51042
51115
+
Arg
TCT
[ENA]
¡û
>W09102712
AAIE01000030
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
29761
29688
-
Arg
TCT
[ENA]
¡û
>W141803590
JPGU01000013
Actinomycetota
Frankia sp. CeD [JPGU]
65314
65387
+
Arg
TCT
[ENA]
¡û
>W141804389
JPHT01000004
Actinomycetota
Frankia sp. Allo2 [JPHT]
32054
31981
-
Arg
TCT
[ENA]
¡û
>W1910546336
FZMO01000090
Actinomycetota
Frankia canadensis [FZMO]
15250
15323
+
Arg
TCT
[ENA]
¡û
>W1911504301
OESX01000090
Actinomycetota
Frankia canadensis [OESX]
15250
15323
+
Arg
TCT
[ENA]
¡û
>W2010347728
CADCWS010000165
Actinomycetota
Frankia sp. AgTrS [CADCWS]
3841
3768
-
Arg
TCT
[ENA]
¡û
>W2010347763
CADCWT010000037
Actinomycetota
Frankia sp. AiOr [CADCWT]
26976
27049
+
Arg
TCT
[ENA]
¡û
>W2010363807
CADDZU010000070
Actinomycetota
Frankia symbiont of Alnus glutinosa UmASt1 [CADDZU]
3848
3775
-
Arg
TCT
[ENA]
¡û
>W2010363893
CADDZW010000072
Actinomycetota
Frankia symbiont of Alnus glutinosa UmASH1 [CADDZW]
3922
3849
-
Arg
TCT
[ENA]
¡û
>W2010428021
FZMO01000090
Actinomycetota
Frankia canadensis [FZMO]
15250
15323
+
Arg
TCT
[ENA]
¡û
>W2011162698
OESX01000090
Actinomycetota
Frankia canadensis [OESX]
15250
15323
+
Arg
TCT
[ENA]
¡û
>W2011663150
SOPN01000003
Actinomycetota
Frankia sp. B2 [SOPN]
194599
194672
+
Arg
TCT
[ENA]
¡û
>W2011693541
SSXH01000552
Actinomycetota
Frankia sp. AvVan [SSXH]
81
154
+
Arg
TCT
[ENA]
¡û
>W2110302361
JADBID010000001
Actinomycetota
Frankia sp. CH37 [JADBID]
9355638
9355565
-
Arg
TCT
[ENA]
¡û
>W2110395541
JADWYV010000033
Actinomycetota
Frankia sp. CN4 [JADWYV]
46974
47047
+
Arg
TCT
[ENA]
¡û
>C211371485
CP079862
Actinomycetota
Frankia sp. ArI3 [CP079862]
853186
853259
+
Arg
TCT
-
¡û
>W1511524712
JYFN01000001
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
13837
13764
-
Arg
TCT
[ENA]
¡û
>W121069961
AJWA01000058
Actinomycetota
Frankia sp. QA3 [AJWA]
31180
31253
+
Arg
TCT
[ENA]
¡û
>W1610648335
LJFZ01000019
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
75970
76045
+
Arg
TCT
[ENA]
¡û
>W1610651430
LJJX01000022
Actinomycetota
Frankia sp. CpI1-P [LJJX]
14963
14890
-
Arg
TCT
[ENA]
¡û
>W1610657210
LJPA01000008
Actinomycetota
Frankia sp. ACN1ag [LJPA]
123037
123110
+
Arg
TCT
[ENA]
¡û
>W1610895103
LRTJ01000047
Actinomycetota
Frankia casuarinae BR [LRTJ]
32534
32461
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK