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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266918 (19 seq.)
>W1710867442
LMIH01000005
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
72
147
+
Trp
CCA
[ENA]
¡û
>W1710872435
LMLZ01000009
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
128
203
+
Trp
CCA
[ENA]
¡û
>W1710872594
LMMC01000008
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
252354
252279
-
Trp
CCA
[ENA]
¡û
>W1710876993
LMPT01000005
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
252676
252601
-
Trp
CCA
[ENA]
¡û
>W1810486291
QAXU01000002
Betaproteobacteria
Acidovorax sp. CF301 [QAXU]
107
182
+
Trp
CCA
[ENA]
¡û
>W1810677450
QKMS01000003
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
333939
333864
-
Trp
CCA
[ENA]
¡û
>W2010370414
CAHJWV010000195
Betaproteobacteria
Burkholderiales bacterium [CAHJWV]
9909
9834
-
Trp
CCA
[ENA]
¡û
>W2010672000
JACCCD010000001
Betaproteobacteria
Acidovorax sp. YL-MeA13-2016 [JACCCD]
4348094
4348019
-
Trp
CCA
[ENA]
¡û
>W2012046955
VIVM01000002
Betaproteobacteria
Acidovorax radicis 2721A [VIVM]
711816
711741
-
Trp
CCA
[ENA]
¡û
>ENV09000572
ABSP01000209
Freshwater sediment metagenome lwMethane_C1
487
412
-
Trp
CCA
[ENA]
¡û
>W2110445489
JAERQZ010000001
Betaproteobacteria
Piscinibacter sp. HJYY11 [JAERQZ]
3950498
3950573
+
Trp
CCA
[ENA]
¡û
>W1511432423
JUGM01000034
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
139
214
+
Trp
CCA
[ENA]
¡û
>W121086406
AKJX01000027
Betaproteobacteria
Acidovorax sp. CF316 [AKJX]
27923
27848
-
Trp
CCA
[ENA]
¡û
>W1610729788
LMIH01000005
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
72
147
+
Trp
CCA
[ENA]
¡û
>W1610729901
LMIJ01000010
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
528173
528098
-
Trp
CCA
[ENA]
¡û
>W1610734713
LMLY01000001
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
254942
254867
-
Trp
CCA
[ENA]
¡û
>W1610734781
LMLZ01000009
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
128
203
+
Trp
CCA
[ENA]
¡û
>W1610734940
LMMC01000008
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
252354
252279
-
Trp
CCA
[ENA]
¡û
>W1610739339
LMPT01000005
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
252676
252601
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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