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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266920 (118 seq.)
>W1710870176
LMKH01000034
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
466013
466088
+
Thr
CGT
[ENA]
¡û
>W1710870905
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
135949
135874
-
Thr
CGT
[ENA]
¡û
>W1710872082
LMLS01000002
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
964600
964675
+
Thr
CGT
[ENA]
¡û
>W1710876476
LMPG01000012
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
324995
325070
+
Thr
CGT
[ENA]
¡û
>W1710877221
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
1091631
1091556
-
Thr
CGT
[ENA]
¡û
>W1710878028
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
178114
178189
+
Thr
CGT
[ENA]
¡û
>W1710907318
LNOS01000002
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
25051
24976
-
Thr
CGT
[ENA]
¡û
>W1711069410
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
343145
343070
-
Thr
CGT
[ENA]
¡û
>W1711227821
LXVY01000006
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
116751
116826
+
Thr
CGT
[ENA]
¡û
>C171095056
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
2471544
2471619
+
Thr
CGT
-
¡û
>C171115128
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
354627
354702
+
Thr
CGT
-
¡û
>W131098627
AORY01000005
Alphaproteobacteria
Sphingomonas sp. Mn802worker [AORY]
291895
291970
+
Thr
CGT
[ENA]
¡û
>W131158676
AQUJ01000001
Alphaproteobacteria
Sphingomonas melonis C3 [AQUJ]
675126
675201
+
Thr
CGT
[ENA]
¡û
>W131046807
AMSR01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
342902
342827
-
Thr
CGT
[ENA]
¡û
>C027956
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
904663
904588
-
Thr
CGT
[Ensembl]
¡û
>WENV180020406
FTCZ01003022
[FTCZ] metagenome; soil
4121
4196
+
Thr
CGT
[ENA]
¡û
>WENV180020460
FTCZ01004220
[FTCZ] metagenome; soil
1851
1926
+
Thr
CGT
[ENA]
¡û
>WENV180065221
MPLY02049018
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
368
443
+
Thr
CGT
[ENA]
¡û
>WENV180080833
MPMC02057045
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
2958
2883
-
Thr
CGT
[ENA]
¡û
>WENV180093430
MPMF02320243
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
567
492
-
Thr
CGT
[ENA]
¡û
>WENV180285731
OBID01659067
[OBID] metagenome; sludge
222
147
-
Thr
CGT
[ENA]
¡û
>W141223045
BACX01000480
Alphaproteobacteria
Sphingomonas-like bacterium B12 [BACX]
497
572
+
Thr
CGT
[ENA]
¡û
>WENV183797962
PVBE010378441
[PVBE] marine metagenome; water
6091
6166
+
Thr
CGT
[ENA]
¡û
>WENV170010486
APMI01018341
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
11350
11275
-
Thr
CGT
[ENA]
¡û
>WENV170706514
LNAP01003783
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23614
23689
+
Thr
CGT
[ENA]
¡û
>C181088892
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
907035
906960
-
Thr
CGT
-
¡û
>C181088943
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
907035
906960
-
Thr
CGT
-
¡û
>C181089095
CP023705
Alphaproteobacteria
Sphingomonas melonis ZJ26 [CP023705]
2988413
2988488
+
Thr
CGT
-
¡û
>C181089270
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
907035
906960
-
Thr
CGT
-
¡û
>C181108628
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
2535214
2535289
+
Thr
CGT
-
¡û
>W09133978
ACQU01000011
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
7816
7891
+
Thr
CGT
[ENA]
¡û
>C191145617
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
904634
904559
-
Thr
CGT
-
¡û
>C191145668
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
904634
904559
-
Thr
CGT
-
¡û
>C191145719
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
904634
904559
-
Thr
CGT
-
¡û
>W141779887
JOOE01000005
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
98206
98281
+
Thr
CGT
[ENA]
¡û
>W1910182416
BJMW01000007
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
46533
46458
-
Thr
CGT
[ENA]
¡û
>W1910182437
BJMX01000001
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
104811
104886
+
Thr
CGT
[ENA]
¡û
>C141008789
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
469816
469891
+
Thr
CGT
[Ensembl]
¡û
>W1810486912
QAYE01000009
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
108893
108968
+
Thr
CGT
[ENA]
¡û
>W1810537959
QDFN01000005
Alphaproteobacteria
Sphingomonas sp. TPD3009 [QDFN]
152594
152519
-
Thr
CGT
[ENA]
¡û
>W1810594379
QFZL01000004
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
504773
504848
+
Thr
CGT
[ENA]
¡û
>SRA1014277
SRR023845.68746
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
138
63
-
Thr
CGT
[SRA]
>SRA1014488
SRR023845.161145
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
193
+
Thr
CGT
[SRA]
>SRA1014537
SRR023845.189142
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
193
+
Thr
CGT
[SRA]
>SRA1014683
SRR023845.261358
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
193
+
Thr
CGT
[SRA]
>SRA1014685
SRR023845.263454
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
122
197
+
Thr
CGT
[SRA]
>SRA1014805
SRR023845.320737
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
42
117
+
Thr
CGT
[SRA]
>SRA1014913
SRR023845.378598
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
75
150
+
Thr
CGT
[SRA]
>SRA1014917
SRR023845.380422
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
85
160
+
Thr
CGT
[SRA]
>C151004588
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
469591
469666
+
Thr
CGT
[Ensembl]
¡û
>C151004639
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
469591
469666
+
Thr
CGT
[Ensembl]
¡û
>C151073183
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
272148
272223
+
Thr
CGT
[Ensembl]
¡û
>W2010096031
BJMW01000007
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
46533
46458
-
Thr
CGT
[ENA]
¡û
>W2010096052
BJMX01000001
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
104811
104886
+
Thr
CGT
[ENA]
¡û
>W2010302871
CABVLH010000006
Alphaproteobacteria
Sphingomonas sp. EC-HK361 [CABVLH]
281333
281408
+
Thr
CGT
[ENA]
¡û
>W2010302887
CABVLI010000029
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
212928
213003
+
Thr
CGT
[ENA]
¡û
>W2010311779
CABWMY010000003
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
149748
149823
+
Thr
CGT
[ENA]
¡û
>W2010370449
CAHJWW010000100
Alphaproteobacteria
Sphingomonas bacterium [CAHJWW]
2960
3035
+
Thr
CGT
[ENA]
¡û
>W2010370526
CAHJXA010000009
Alphaproteobacteria
Sphingomonas bacterium [CAHJXA]
22622
22547
-
Thr
CGT
[ENA]
¡û
>W2010474868
JAAILI010000050
Alphaproteobacteria
Sphingomonas sp. S2M10 [JAAILI]
60428
60353
-
Thr
CGT
[ENA]
¡û
>W2010533960
JAAOYQ010000002
Alphaproteobacteria
Sphingomonas aerolata AS2.4 [JAAOYQ]
467931
467856
-
Thr
CGT
[ENA]
¡û
>W2010559881
JAASQM010000005
Alphaproteobacteria
Sphingomonas naasensis DSM 100060 [JAASQM]
133157
133082
-
Thr
CGT
[ENA]
¡û
>W2010607275
JABMCH010000063
Alphaproteobacteria
Sphingomonas zeae DSM 100049 [JABMCH]
125064
125139
+
Thr
CGT
[ENA]
¡û
>W2010669979
JACCAR010000001
Alphaproteobacteria
Sphingomonas sp. R3G8D [JACCAR]
415959
415884
-
Thr
CGT
[ENA]
¡û
>W2010671774
JACCBY010000005
Alphaproteobacteria
Sphingomonas melonis AS2.3 [JACCBY]
103340
103265
-
Thr
CGT
[ENA]
¡û
>W2010682055
JACEIA010000007
Alphaproteobacteria
Sphingomonas sp. CGMCC 1.13658 [JACEIA]
163544
163469
-
Thr
CGT
[ENA]
¡û
>W2010682097
JACEIB010000025
Alphaproteobacteria
Sphingomonas sp. CGMCC 1.13654 [JACEIB]
62098
62023
-
Thr
CGT
[ENA]
¡û
>W2010709041
JACHLW010000001
Alphaproteobacteria
Sphingomonas sp. R1S3D [JACHLW]
2753048
2752973
-
Thr
CGT
[ENA]
¡û
>W2010732018
JACIJN010000004
Alphaproteobacteria
Sphingomonas endophytica DSM 101535 [JACIJN]
207897
207822
-
Thr
CGT
[ENA]
¡û
>W2011269783
QLJL01000008
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt1_0416 [QLJL]
83634
83709
+
Thr
CGT
[ENA]
¡û
>W2011619366
SLUY01000003
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
571720
571795
+
Thr
CGT
[ENA]
¡û
>W2011623868
SLXW01000009
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
42948
43023
+
Thr
CGT
[ENA]
¡û
>W2011624071
SLYA01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
466491
466566
+
Thr
CGT
[ENA]
¡û
>W2011624285
SLYF01000006
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
3990
3915
-
Thr
CGT
[ENA]
¡û
>W2011685865
SRXT01000002
Alphaproteobacteria
Sphingomonas gei ZFGT-11 [SRXT]
468676
468601
-
Thr
CGT
[ENA]
¡û
>W2011685922
SRXU01000006
Alphaproteobacteria
Sphingomonas naasensis KIS18-15 [SRXU]
184476
184551
+
Thr
CGT
[ENA]
¡û
>W2012019599
VFNW01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-23394 [VFNW]
1006997
1006922
-
Thr
CGT
[ENA]
¡û
>W2012019944
VFOD01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4492 [VFOD]
66044
66119
+
Thr
CGT
[ENA]
¡û
>W2012020101
VFOF01000001
Alphaproteobacteria
Zymomonas mobilis AN0101 [VFOF]
1000973
1000898
-
Thr
CGT
[ENA]
¡û
>W2012020162
VFOG01000001
Alphaproteobacteria
Zymomonas mobilis DSM 14017 [VFOG]
112327
112252
-
Thr
CGT
[ENA]
¡û
>W2012020190
VFOH01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12495 [VFOH]
1675018
1674943
-
Thr
CGT
[ENA]
¡û
>W2012020242
VFOI01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12494 [VFOI]
1032976
1032901
-
Thr
CGT
[ENA]
¡û
>W2012022440
VFPZ01000002
Alphaproteobacteria
Sphingomonas trueperi 1152a [VFPZ]
655851
655776
-
Thr
CGT
[ENA]
¡û
>W2012046589
VIVF01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12497 [VIVF]
765290
765215
-
Thr
CGT
[ENA]
¡û
>W2012046603
VIVG01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4286 [VIVG]
401173
401248
+
Thr
CGT
[ENA]
¡û
>W2012047448
VIVT01000005
Alphaproteobacteria
Zymomonas mobilis NRRL B-14022 [VIVT]
115853
115778
-
Thr
CGT
[ENA]
¡û
>W2012425064
WQMS01000001
Alphaproteobacteria
Sphingomonas sp. MAH-20 [WQMS]
163544
163469
-
Thr
CGT
[ENA]
¡û
>W2012428090
WSFN01000014
Alphaproteobacteria
Sphingomonas sp. MAH-6 [WSFN]
62098
62023
-
Thr
CGT
[ENA]
¡û
>W2110290883
JACYUP010000006
Alphaproteobacteria
Sphingomonas sp. CFBP 13733 CFBP13733 [JACYUP]
7817
7742
-
Thr
CGT
[ENA]
¡û
>W2110291630
JACYVG010000008
Alphaproteobacteria
Sphingomonas sp. CFBP 13714 CFBP13714 [JACYVG]
194607
194682
+
Thr
CGT
[ENA]
¡û
>W2110569907
JAGSNX010000002
Alphaproteobacteria
Microvirga sp. SRT01 [JAGSNX]
230217
230142
-
Thr
CGT
[ENA]
¡û
>C211134399
CP060494
Alphaproteobacteria
Sphingosinithalassobacter sp. CS137 [CP060494]
2768951
2769026
+
Thr
CGT
-
¡û
>C211367540
CP079220
Alphaproteobacteria
Zymomonas mobilis ZM401 [CP079220]
1090457
1090532
+
Thr
CGT
-
¡û
>C211405900
CP083898
Alphaproteobacteria
Zymomonas mobilis ZM481 [CP083898]
1059520
1059445
-
Thr
CGT
-
¡û
>W1510019399
BBWU01000015
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
50233
50308
+
Thr
CGT
[ENA]
¡û
>C231375813
CP096971
Alphaproteobacteria
Sphingomonas sp. SUN019 [CP096971]
749026
749101
+
Thr
CGT
-
¡û
>W2110762910
RCVT01000002
Alphaproteobacteria
Sphingomonas sp. MA1305 [RCVT]
961138
961213
+
Thr
CGT
[ENA]
¡û
>C231406192
CP098762
Alphaproteobacteria
Sphingomonas aerolata PDD-32b-11 [CP098762]
3797492
3797417
-
Thr
CGT
-
¡û
>C231416214
CP099619
Alphaproteobacteria
Sphingomonadaceae bacterium OTU29MARTA1 [CP099619]
1240512
1240437
-
Thr
CGT
-
¡û
>C231565261
CP115174
Alphaproteobacteria
Sphingomonas sp. PAMB00755 [CP115174]
1383827
1383902
+
Thr
CGT
-
¡û
>C241129910
CP048630
Alphaproteobacteria
Ancylobacter pratisalsi DSM 102029 [CP048630]
2153224
2153299
+
Thr
CGT
-
¡û
>C10114572
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
467315
467390
+
Thr
CGT
[Ensembl]
¡û
>C11124212
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
427956
428031
+
Thr
CGT
[Ensembl]
¡û
>W1511640326
LDUA01000002
Alphaproteobacteria
Sphingomonas paucimobilis LCT-SP1 [LDUA]
353416
353491
+
Thr
CGT
[ENA]
¡û
>C121003133
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
466353
466428
+
Thr
CGT
[Ensembl]
¡û
>C121015246
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
462319
462394
+
Thr
CGT
[Ensembl]
¡û
>W121105787
ALBQ01000003
Alphaproteobacteria
Sphingomonas sp. ATCC 31555 [ALBQ]
8114
8189
+
Thr
CGT
[ENA]
¡û
>W1610592907
LDTC01000076
Alphaproteobacteria
Sphingomonas sanguinis [LDTC]
14084
14009
-
Thr
CGT
[ENA]
¡û
>W1610733107
LMKT01000025
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
194132
194207
+
Thr
CGT
[ENA]
¡û
>W1610733395
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
193779
193854
+
Thr
CGT
[ENA]
¡û
>W1610735179
LMMH01000032
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
175367
175442
+
Thr
CGT
[ENA]
¡û
>W1610766332
LNOS01000002
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
25051
24976
-
Thr
CGT
[ENA]
¡û
>W1610909938
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
343145
343070
-
Thr
CGT
[ENA]
¡û
>W1611011785
LXVY01000006
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
116751
116826
+
Thr
CGT
[ENA]
¡û
>W1710542347
FNZB01000003
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
172266
172191
-
Thr
CGT
[ENA]
¡û
>W1710546428
FOCF01000002
Alphaproteobacteria
Sphingomonas gellani S6-262 [FOCF]
130798
130873
+
Thr
CGT
[ENA]
¡û
>W1710566297
FORV01000006
Alphaproteobacteria
Sphingomonas sp. NFR04 [FORV]
257554
257629
+
Thr
CGT
[ENA]
¡û
>W1710712187
LDTC01000076
Alphaproteobacteria
Sphingomonas sanguinis [LDTC]
14084
14009
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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