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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267014 (121 seq.)
>W1710878910
LMRI01000003
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
253569
253642
+
Asn
GTT
[ENA]
¡û
>W1710879253
LMRN01000021
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
228579
228506
-
Asn
GTT
[ENA]
¡û
>W1710879350
LMRP01000004
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
253596
253669
+
Asn
GTT
[ENA]
¡û
>W1710879384
LMRQ01000014
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
302873
302946
+
Asn
GTT
[ENA]
¡û
>W1710994841
LPZL01000022
Actinomycetota
Rhodococcus corynebacterioides [LPZL]
155385
155461
+
Asn
GTT
[ENA]
¡û
>W1710994987
LPZO01000020
Actinomycetota
Rhodococcus kroppenstedtii [LPZO]
46075
46002
-
Asn
GTT
[ENA]
¡û
>W131099097
AOSR01000013
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
136719
136646
-
Asn
GTT
[ENA]
¡û
>W131217663
ATXA01000004
Actinomycetota
Frankia sp. Iso899 [ATXA]
2630
2557
-
Asn
GTT
[ENA]
¡û
>W131185145
ARTM01000035
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
300747
300820
+
Asn
GTT
[ENA]
¡û
>WENV180016977
FSWJ01000124
[FSWJ] metagenome; soil
6754
6681
-
Asn
GTT
[ENA]
¡û
>WENV180024102
FTIF01039582
[FTIF] metagenome; soil
659
732
+
Asn
GTT
[ENA]
¡û
>WENV180356796
OBNL01030166
[OBNL] marine metagenome; ENVO:00002010
232
307
+
Asn
GTT
[ENA]
¡û
>WENV180377731
OBON01103488
[OBON] marine metagenome; sea water
238
313
+
Asn
GTT
[ENA]
¡û
>W141091624
AUZE01000005
Actinomycetota
actinobacterium LLX17 [AUZE]
62441
62516
+
Asn
GTT
[ENA]
¡û
>WENV181169706
OEIV010007813
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2880
2807
-
Asn
GTT
[ENA]
¡û
>WENV181311298
OFJB01000647
[OFJB] sludge metagenome; sludge
3731
3804
+
Asn
GTT
[ENA]
¡û
>WENV181385228
OFRI01051742
[OFRI] wastewater metagenome; Exp Tend VB 90WW
514
587
+
Asn
GTT
[ENA]
¡û
>WENV181393231
OFRX01080254
[OFRX] seawater metagenome; seawater
216
141
-
Asn
GTT
[ENA]
¡û
>WENV183627841
OOGL01059082
[OOGL] marine metagenome; sea ice
506
431
-
Asn
GTT
[ENA]
¡û
>WENV183629601
OOGP01083627
[OOGP] marine metagenome; seawater
216
141
-
Asn
GTT
[ENA]
¡û
>WENV183630110
OOGR01018000
[OOGR] marine metagenome; seawater
234
309
+
Asn
GTT
[ENA]
¡û
>WENV170567760
FLMP01004902
[FLMP] seawater metagenome; seawater
1231
1156
-
Asn
GTT
[ENA]
¡û
>WENV170571862
FLOH01000347
[FLOH] marine metagenome; water
101159
101234
+
Asn
GTT
[ENA]
¡û
>WENV170627441
FUWD013232788
[FUWD] metagenome; unknown
9936
9861
-
Asn
GTT
[ENA]
¡û
>WENV170949291
MEHZ011394671
[MEHZ] marine metagenome; marine surface water
921
996
+
Asn
GTT
[ENA]
¡û
>WENV170974820
MTKY01076194
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1306
1233
-
Asn
GTT
[ENA]
¡û
>WENV170994433
MWWD01110861
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
161
88
-
Asn
GTT
[ENA]
¡û
>C181017392
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1323644
1323717
+
Asn
GTT
-
¡û
>C181107046
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1297397
1297470
+
Asn
GTT
-
¡û
>W141702688
JMLQ01000004
Actinomycetota
Rhodococcus sp. UNC23MFCrub1.1 [JMLQ]
329025
328952
-
Asn
GTT
[ENA]
¡û
>W1911279033
NTGA01000075
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
883
956
+
Asn
GTT
[ENA]
¡û
>W1810463946
PZZY01000005
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
146962
147035
+
Asn
GTT
[ENA]
¡û
>W1810658282
QJJF01000003
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
249252
249179
-
Asn
GTT
[ENA]
¡û
>SRA1024488
SRR035084.336032
454 Sequencing (SRP001805)
132
208
+
Asn
GTT
[SRA]
>W2010458904
JAAFYU010000006
Actinomycetota
Rhodococcus kroppenstedtii K5 [JAAFYU]
82127
82200
+
Asn
GTT
[ENA]
¡û
>W2010495939
JAALDV010000011
Actinomycetota
Dietzia sp. DQ12-76 [JAALDV]
728
801
+
Asn
GTT
[ENA]
¡û
>W2010496014
JAALDW010000350
Actinomycetota
Dietzia sp. DQ11-38-2 [JAALDW]
8843
8770
-
Asn
GTT
[ENA]
¡û
>W2010496062
JAALDX010000531
Actinomycetota
Dietzia sp. SLG310A2-38A2 [JAALDX]
1880
1953
+
Asn
GTT
[ENA]
¡û
>W2010496073
JAALDY010000047
Actinomycetota
Dietzia natronolimnaea HS-1 [JAALDY]
1911
1984
+
Asn
GTT
[ENA]
¡û
>W2010496119
JAALDZ010000049
Actinomycetota
Dietzia sp. CQ4 [JAALDZ]
1959
2032
+
Asn
GTT
[ENA]
¡û
>W2010496166
JAALEA010000092
Actinomycetota
Dietzia cercidiphylli YIM 65002T [JAALEA]
7650
7577
-
Asn
GTT
[ENA]
¡û
>W2010496242
JAALEB010000477
Actinomycetota
Dietzia sp. Cai40 [JAALEB]
640
713
+
Asn
GTT
[ENA]
¡û
>W2010496285
JAALEC010000688
Actinomycetota
Dietzia sp. DQ11-44 [JAALEC]
315
388
+
Asn
GTT
[ENA]
¡û
>W2010496327
JAALED010000556
Actinomycetota
Dietzia sp. B19 [JAALED]
634
707
+
Asn
GTT
[ENA]
¡û
>W2010496359
JAALEE010000242
Actinomycetota
Dietzia sp. CW19 Cw19 [JAALEE]
8694
8621
-
Asn
GTT
[ENA]
¡û
>W2010496391
JAALEF010000122
Actinomycetota
Dietzia sp. B44 [JAALEF]
618
691
+
Asn
GTT
[ENA]
¡û
>W2010672048
JACCCE010000001
Actinomycetota
Dietzia sp. MeA6-2017 [JACCCE]
2454534
2454607
+
Asn
GTT
[ENA]
¡û
>W2010780815
LMTG01000093
Actinomycetota
Dietzia psychralcaliphila ILA-1 [LMTG]
6058
5985
-
Asn
GTT
[ENA]
¡û
>W2011072619
NTGA01000075
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
883
956
+
Asn
GTT
[ENA]
¡û
>SRA1045339
SRR035093.72842
454 Sequencing (SRP001814)
159
84
-
Asn
GTT
[SRA]
>W2012198032
VWSD01000067
Actinomycetota
Cellulomonas sp. Ao-9 [VWSD]
4039
4112
+
Asn
GTT
[ENA]
¡û
>W2110019364
BMCU01000002
Actinomycetota
Rhodococcus trifolii CCM 7905 [BMCU]
254021
254094
+
Asn
GTT
[ENA]
¡û
>W2110133032
CAKASL010000002
Actinomycetota
Aeromicrobium sp. Leaf350 [CAKASL]
147256
147329
+
Asn
GTT
[ENA]
¡û
>W2110182255
JABUBR010000015
Actinomycetota
Rhodococcus corynebacterioides BP-317 [JABUBR]
911
838
-
Asn
GTT
[ENA]
¡û
>W2110182277
JABUBS010000004
Actinomycetota
Rhodococcus corynebacterioides BP-287 [JABUBS]
191026
190953
-
Asn
GTT
[ENA]
¡û
>W2110182339
JABUBT010000026
Actinomycetota
Rhodococcus corynebacterioides BP-282 [JABUBT]
49332
49259
-
Asn
GTT
[ENA]
¡û
>W2110182378
JABUBU010000008
Actinomycetota
Rhodococcus corynebacterioides BP-281 [JABUBU]
49457
49384
-
Asn
GTT
[ENA]
¡û
>W2110183898
JABUDD010000003
Actinomycetota
Rhodococcus sp. BP-370 [JABUDD]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110183944
JABUDE010000003
Actinomycetota
Rhodococcus sp. BP-369 [JABUDE]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110183980
JABUDF010000003
Actinomycetota
Rhodococcus sp. BP-364 [JABUDF]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184026
JABUDG010000003
Actinomycetota
Rhodococcus sp. BP-363 [JABUDG]
394662
394735
+
Asn
GTT
[ENA]
¡û
>W2110184072
JABUDH010000003
Actinomycetota
Rhodococcus sp. BP-362 [JABUDH]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184128
JABUDI010000003
Actinomycetota
Rhodococcus sp. BP-361 [JABUDI]
858759
858686
-
Asn
GTT
[ENA]
¡û
>W2110184164
JABUDJ010000003
Actinomycetota
Rhodococcus sp. BP-360 [JABUDJ]
394662
394735
+
Asn
GTT
[ENA]
¡û
>W2110184220
JABUDK010000003
Actinomycetota
Rhodococcus sp. BP-359 [JABUDK]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184256
JABUDL010000003
Actinomycetota
Rhodococcus sp. BP-358 [JABUDL]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184312
JABUDM010000003
Actinomycetota
Rhodococcus sp. BP-357 [JABUDM]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184358
JABUDN010000003
Actinomycetota
Rhodococcus sp. BP-353 [JABUDN]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184394
JABUDO010000003
Actinomycetota
Rhodococcus sp. BP-352 [JABUDO]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184440
JABUDP010000003
Actinomycetota
Rhodococcus sp. BP-351 [JABUDP]
394662
394735
+
Asn
GTT
[ENA]
¡û
>W2110184486
JABUDQ010000003
Actinomycetota
Rhodococcus sp. BP-350 [JABUDQ]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184532
JABUDR010000003
Actinomycetota
Rhodococcus sp. BP-349 [JABUDR]
394662
394735
+
Asn
GTT
[ENA]
¡û
>W2110184588
JABUDS010000003
Actinomycetota
Rhodococcus sp. BP-344 [JABUDS]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184634
JABUDT010000003
Actinomycetota
Rhodococcus sp. BP-343 [JABUDT]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184670
JABUDU010000003
Actinomycetota
Rhodococcus sp. BP-342 [JABUDU]
394662
394735
+
Asn
GTT
[ENA]
¡û
>W2110184726
JABUDV010000003
Actinomycetota
Rhodococcus sp. BP-341 [JABUDV]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184762
JABUDW010000003
Actinomycetota
Rhodococcus sp. BP-340 [JABUDW]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184818
JABUDX010000003
Actinomycetota
Rhodococcus sp. BP-339 [JABUDX]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184854
JABUDY010000003
Actinomycetota
Rhodococcus sp. BP-336 [JABUDY]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184900
JABUDZ010000003
Actinomycetota
Rhodococcus sp. BP-335 [JABUDZ]
394723
394796
+
Asn
GTT
[ENA]
¡û
>W2110184956
JABUEA010000003
Actinomycetota
Rhodococcus sp. BP-334 [JABUEA]
858750
858677
-
Asn
GTT
[ENA]
¡û
>W2110184992
JABUEB010000003
Actinomycetota
Rhodococcus sp. BP-333 [JABUEB]
394662
394735
+
Asn
GTT
[ENA]
¡û
>W2110185014
JABUEC010000001
Actinomycetota
Rhodococcus sp. BP-332 [JABUEC]
897208
897281
+
Asn
GTT
[ENA]
¡û
>W2110185092
JABUED010000007
Actinomycetota
Rhodococcus sp. BP-331 [JABUED]
136975
136902
-
Asn
GTT
[ENA]
¡û
>W2110185115
JABUEE010000004
Actinomycetota
Rhodococcus sp. BP-316 [JABUEE]
132040
132113
+
Asn
GTT
[ENA]
¡û
>W2110185166
JABUEF010000005
Actinomycetota
Rhodococcus sp. BP-288 [JABUEF]
339860
339787
-
Asn
GTT
[ENA]
¡û
>W2110185218
JABUEG010000004
Actinomycetota
Rhodococcus sp. BP-285 [JABUEG]
339655
339582
-
Asn
GTT
[ENA]
¡û
>W2110185262
JABUEH010000005
Actinomycetota
Rhodococcus sp. BP-283 [JABUEH]
52918
52991
+
Asn
GTT
[ENA]
¡û
>W2110185309
JABUEI010000008
Actinomycetota
Rhodococcus sp. BP-241 [JABUEI]
158354
158281
-
Asn
GTT
[ENA]
¡û
>W2110185333
JABUEJ010000003
Actinomycetota
Rhodococcus sp. BP-188 [JABUEJ]
52880
52953
+
Asn
GTT
[ENA]
¡û
>W2110185393
JABUEK010000002
Actinomycetota
Rhodococcus sp. BP-160 [JABUEK]
339655
339582
-
Asn
GTT
[ENA]
¡û
>W2110185432
JABUEL010000003
Actinomycetota
Rhodococcus sp. BP-149 [JABUEL]
339860
339787
-
Asn
GTT
[ENA]
¡û
>W2110185488
JABUEM010000005
Actinomycetota
Rhodococcus sp. BP-142 [JABUEM]
339655
339582
-
Asn
GTT
[ENA]
¡û
>W2110185518
JABUEN010000017
Actinomycetota
Rhodococcus sp. BP-110 [JABUEN]
52847
52920
+
Asn
GTT
[ENA]
¡û
>W2110185562
JABUEO010000001
Actinomycetota
Rhodococcus sp. BP-107 [JABUEO]
339655
339582
-
Asn
GTT
[ENA]
¡û
>W2110185965
JABUKE010000003
Actinomycetota
Rhodococcus kroppenstedtii BP-289 [JABUKE]
144130
144057
-
Asn
GTT
[ENA]
¡û
>W2110186011
JABUKF010000003
Actinomycetota
Rhodococcus kroppenstedtii BP-286 [JABUKF]
151247
151174
-
Asn
GTT
[ENA]
¡û
>W2110186054
JABUKG010000004
Actinomycetota
Rhodococcus kroppenstedtii BP-284 [JABUKG]
129774
129847
+
Asn
GTT
[ENA]
¡û
>W2110203121
JACEFU010000038
Actinomycetota
Rhodococcus kroppenstedtii 20200126096 [JACEFU]
27037
27110
+
Asn
GTT
[ENA]
¡û
>W2110305529
JADDKI010000197
Actinomycetota
Dietzia sp. SYD-A1 [JADDKI]
14033
13960
-
Asn
GTT
[ENA]
¡û
>W2110423155
JAEKIZ010000009
Actinomycetota
Dietzia psychralcaliphila JI1D [JAEKIZ]
167491
167564
+
Asn
GTT
[ENA]
¡û
>W2110457744
JAFBBK010000001
Actinomycetota
Rhodococcus corynebacterioides PvP111 [JAFBBK]
2121340
2121267
-
Asn
GTT
[ENA]
¡û
>W2110499253
JAFIBH010000001
Actinomycetota
Rhodococcus sp. PvP016 [JAFIBH]
3806783
3806710
-
Asn
GTT
[ENA]
¡û
>C201182483
CP046567
Actinomycetota
Dietzia sp. DQ12-45-1b [CP046567]
1295616
1295689
+
Asn
GTT
-
¡û
>C231382812
CP097332
Actinomycetota
Jatrophihabitans telluris N237 [CP097332]
3094928
3094855
-
Asn
GTT
-
¡û
>W2130012568
JABUKH010000008
Actinomycetota
Rhodococcus kroppenstedtii BP-150 [JABUKH]
120611
120684
+
Asn
GTT
[ENA]
¡û
>C241207019
CP108043
Actinomycetota
Rhodococcus sp. NBC_00294 [CP108043]
2473896
2473823
-
Asn
GTT
-
¡û
>W1511509005
JXQS01000003
Actinomycetota
Rhodococcus sp. MEB064 [JXQS]
143440
143513
+
Asn
GTT
[ENA]
¡û
>C161084607
CP015219
Actinomycetota
Rhodococcus sp. PBTS 1 [CP015219]
1179635
1179562
-
Asn
GTT
[Ensembl]
¡û
>W1610052682
BBID01000030
Actinomycetota
Kineosporia rhamnosa JCM 9954 [BBID]
513
586
+
Asn
GTT
[ENA]
¡û
>W1610068679
BCRN01000003
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
3206
3131
-
Asn
GTT
[ENA]
¡û
>W1610741256
LMRI01000003
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
253569
253642
+
Asn
GTT
[ENA]
¡û
>W1610741599
LMRN01000021
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
228579
228506
-
Asn
GTT
[ENA]
¡û
>W1610741696
LMRP01000004
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
253596
253669
+
Asn
GTT
[ENA]
¡û
>W1610741730
LMRQ01000014
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
302873
302946
+
Asn
GTT
[ENA]
¡û
>W1610849498
LPZL01000022
Actinomycetota
Rhodococcus corynebacterioides [LPZL]
155385
155461
+
Asn
GTT
[ENA]
¡û
>W1610849644
LPZO01000020
Actinomycetota
Rhodococcus kroppenstedtii [LPZO]
46075
46002
-
Asn
GTT
[ENA]
¡û
>W1710049060
BBID01000030
Actinomycetota
Kineosporia rhamnosa JCM 9954 [BBID]
513
586
+
Asn
GTT
[ENA]
¡û
>W1710066052
BCRN01000003
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
3206
3131
-
Asn
GTT
[ENA]
¡û
>W1710071738
BCWV01000004
Actinomycetota
Rhodococcus corynebacterioides NBRC 14404 [BCWV]
422492
422568
+
Asn
GTT
[ENA]
¡û
>W1710555484
FOJN01000001
Actinomycetota
Rhodococcus kroppenstedtii [FOJN]
257655
257728
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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