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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
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Representative sequence of each cluster
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Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267036 (127 seq.)
>W131159389
AQUZ01000074
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
39539
39616
+
Ala
CGC
[ENA]
¡û
>W131165597
ARBS01000002
Actinomycetota
Longispora albida DSM 44784 [ARBS]
399818
399893
+
Ala
CGC
[ENA]
¡û
>W131224326
AUCS01000002
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
617155
617080
-
Ala
CGC
[ENA]
¡û
>WENV180098586
MTBK01255882
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
206
281
+
Ala
CGC
[ENA]
¡û
>WENV181163259
OEIO01171284
[OEIO] marine metagenome; sea ice
268
341
+
Ala
CGC
[ENA]
¡û
>W141243001
CAJB01000113
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
11549
11626
+
Ala
CGC
[ENA]
¡û
>WENV183619068
OOFP01023215
[OOFP] marine metagenome; seawater
419
346
-
Ala
CGC
[ENA]
¡û
>WENV183678099
ORJL011837076
[ORJL] groundwater metagenome; groundwater
135
61
-
Ala
CGC
[ENA]
¡û
>WENV170011466
APMI01067364
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
492
567
+
Ala
CGC
[ENA]
¡û
>WENV170011744
APMI01087326
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2396
2321
-
Ala
CGC
[ENA]
¡û
>WENV170553898
CXWK01036890
[CXWK] wastewater metagenome; activated sludge
2721
2646
-
Ala
CGC
[ENA]
¡û
>WENV170604036
FUWD010355565
[FUWD] metagenome; unknown
503
576
+
Ala
CGC
[ENA]
¡û
>WENV170620698
FUWD013037114
[FUWD] metagenome; unknown
4636
4561
-
Ala
CGC
[ENA]
¡û
>WENV170626818
FUWD013229707
[FUWD] metagenome; unknown
2328
2255
-
Ala
CGC
[ENA]
¡û
>WENV170626823
FUWD013229727
[FUWD] metagenome; unknown
14777
14704
-
Ala
CGC
[ENA]
¡û
>WENV170955826
MJUK01023361
[MJUK] soil metagenome; viral particles from soil sample TG5
198
272
+
Ala
CGC
[ENA]
¡û
>C181225152
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
2464436
2464361
-
Ala
CGC
-
¡û
>C191130605
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
702860
702934
+
Ala
CGC
-
¡û
>C191158365
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
654425
654498
+
Ala
CGC
-
¡û
>W1810592381
QFXK01000030
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
154434
154357
-
Ala
CGC
[ENA]
¡û
>SRA1023718
SRR035084.160050
454 Sequencing (SRP001805)
110
37
-
Ala
CGC
[SRA]
>SRA1024268
SRR035084.288110
454 Sequencing (SRP001805)
84
159
+
Ala
CGC
[SRA]
>SRA1024280
SRR035084.291525
454 Sequencing (SRP001805)
306
233
-
Ala
CGC
[SRA]
>W2010106211
BKAF01000054
Actinomycetota
Nocardioides psychrotolerans NBRC 108563 [BKAF]
11912
11987
+
Ala
CGC
[ENA]
¡û
>W2010465971
JAAGLV010000030
Actinomycetota
Streptomyces sp. SID13031 [JAAGLV]
154
77
-
Ala
CGC
[ENA]
¡û
>W2010468938
JAAGOA010000008
Actinomycetota
Phytoactinopolyspora halotolerans CCTCC AB 2017055 [JAAGOA]
84840
84765
-
Ala
CGC
[ENA]
¡û
>W2010494587
JAALAA010000006
Actinomycetota
Nocardioides sp. KC13 [JAALAA]
101428
101503
+
Ala
CGC
[ENA]
¡û
>W2010561240
JAASRO010000001
Actinomycetota
Kribbella shirazensis DSM 45490 [JAASRO]
2627468
2627541
+
Ala
CGC
[ENA]
¡û
>W2010603448
JABJRC010000008
Actinomycetota
Kribbella sandramycini ATCC 39419 [JABJRC]
230968
230895
-
Ala
CGC
[ENA]
¡û
>W2010668630
JACBZR010000001
Actinomycetota
Nocardioides panzhihuensis DSM 26487 [JACBZR]
5839360
5839435
+
Ala
CGC
[ENA]
¡û
>W2010706432
JACHKF010000001
Actinomycetota
Kribbella sandramycini DSM 15626 [JACHKF]
7932554
7932481
-
Ala
CGC
[ENA]
¡û
>W2010710533
JACHMY010000001
Actinomycetota
Kribbella italica DSM 28967 [JACHMY]
4762810
4762737
-
Ala
CGC
[ENA]
¡û
>W2010710927
JACHNF010000001
Actinomycetota
Kribbella solani DSM 17294 [JACHNF]
7088425
7088498
+
Ala
CGC
[ENA]
¡û
>W2011165805
OKQN01000007
Actinomycetota
Janibacter sp. Marseille-P4121 [OKQN]
282832
282906
+
Ala
CGC
[ENA]
¡û
>W2011510666
RZHA01000507
Actinomycetota
Phytoactinopolyspora endophytica EGI 60009 [RZHA]
4278
4203
-
Ala
CGC
[ENA]
¡û
>W2011578498
SGXJ01000002
Actinomycetota
Kribbella sp. VKM Ac-2569 [SGXJ]
712812
712739
-
Ala
CGC
[ENA]
¡û
>W2011579894
SHKR01000011
Actinomycetota
Kribbella soli VKM Ac-2540 [SHKR]
754066
753993
-
Ala
CGC
[ENA]
¡û
>W2011605091
SJJY01000013
Actinomycetota
Kribbella sp. YM55 SK5 [SJJY]
166833
166760
-
Ala
CGC
[ENA]
¡û
>W2011605116
SJJZ01000001
Actinomycetota
Kribbella soli KCTC 29219 [SJJZ]
742240
742167
-
Ala
CGC
[ENA]
¡û
>W2011605164
SJKA01000004
Actinomycetota
Kribbella sindirgiensis DSM 27082 [SJKA]
544075
544002
-
Ala
CGC
[ENA]
¡û
>W2011605235
SJKB01000012
Actinomycetota
Kribbella pittospori NRRL B-24813 [SJKB]
108992
109065
+
Ala
CGC
[ENA]
¡û
>W2011605259
SJKC01000001
Actinomycetota
Kribbella sp. YM55 [SJKC]
1886667
1886740
+
Ala
CGC
[ENA]
¡û
>W2011605352
SJKD01000016
Actinomycetota
Kribbella sp. YM53 [SJKD]
65821
65748
-
Ala
CGC
[ENA]
¡û
>W2011619714
SLVF01000004
Actinomycetota
Kribbella sp. VKM Ac-2568 [SLVF]
32165
32242
+
Ala
CGC
[ENA]
¡û
>W2011620807
SLVW01000017
Actinomycetota
Kribbella sp. VKM Ac-2500 [SLVW]
46491
46568
+
Ala
CGC
[ENA]
¡û
>W2011621895
SLWM01000016
Actinomycetota
Kribbella sp. VKM Ac-2538 [SLWM]
46491
46568
+
Ala
CGC
[ENA]
¡û
>W2011621917
SLWN01000002
Actinomycetota
Kribbella sp. VKM Ac-2572 [SLWN]
732640
732567
-
Ala
CGC
[ENA]
¡û
>W2011622113
SLWR01000004
Actinomycetota
Kribbella sp. VKM Ac-2541 [SLWR]
261470
261397
-
Ala
CGC
[ENA]
¡û
>W2011636327
SMKR01000015
Actinomycetota
Kribbella sp. 16K104 [SMKR]
13708
13781
+
Ala
CGC
[ENA]
¡û
>W2011648124
SNWQ01000012
Actinomycetota
Kribbella sp. VKM Ac-2527 [SNWQ]
132611
132684
+
Ala
CGC
[ENA]
¡û
>W2011648211
SNWS01000002
Actinomycetota
Kribbella sp. VKM Ac-2571 [SNWS]
332603
332676
+
Ala
CGC
[ENA]
¡û
>W2011655991
SOCE01000001
Actinomycetota
Kribbella sp. VKM Ac-2575 [SOCE]
5158168
5158245
+
Ala
CGC
[ENA]
¡û
>W2011657526
SODF01000003
Actinomycetota
Kribbella sp. VKM Ac-2570 [SODF]
943156
943083
-
Ala
CGC
[ENA]
¡û
>W2011657949
SODP01000003
Actinomycetota
Kribbella sp. VKM Ac-2573 [SODP]
594898
594971
+
Ala
CGC
[ENA]
¡û
>W2011658131
SODT01000011
Actinomycetota
Kribbella sp. VKM Ac-2566 [SODT]
135196
135269
+
Ala
CGC
[ENA]
¡û
>W2011658204
SODU01000003
Actinomycetota
Kribbella sp. VKMAc-2574 [SODU]
750038
749965
-
Ala
CGC
[ENA]
¡û
>W2011751965
SZPZ01000006
Actinomycetota
Kribbella sp. NEAU-THZ 27 [SZPZ]
529439
529512
+
Ala
CGC
[ENA]
¡û
>W2011804838
UESZ01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [UESZ]
2599697
2599622
-
Ala
CGC
[ENA]
¡û
>W2011822009
UFYA01000001
Actinomycetota
Dermatophilus congolensis NCTC7915 [UFYA]
1682696
1682621
-
Ala
CGC
[ENA]
¡û
>W2012017492
VFMM01000001
Actinomycetota
Kribbella jejuensis DSM 17305 [VFMM]
1740906
1740833
-
Ala
CGC
[ENA]
¡û
>W2012018789
VFNJ01000001
Actinomycetota
Nocardioides sp. SLBN-172 [VFNJ]
901501
901576
+
Ala
CGC
[ENA]
¡û
>W2012020917
VFOW01000001
Actinomycetota
Stackebrandtia endophytica DSM 45928 [VFOW]
2288598
2288671
+
Ala
CGC
[ENA]
¡û
>W2012029687
VFXM01000002
Actinomycetota
Ornithinimicrobium sp. DSM 17687 [VFXM]
203918
203992
+
Ala
CGC
[ENA]
¡û
>W2012046892
VIVK01000001
Actinomycetota
Kribbella amoyensis DSM 24683 [VIVK]
125317
125242
-
Ala
CGC
[ENA]
¡û
>W2012047277
VIVQ01000001
Actinomycetota
Rudaeicoccus suwonensis DSM 19560 [VIVQ]
557798
557873
+
Ala
CGC
[ENA]
¡û
>W2012082841
VLLL01000006
Actinomycetota
Stackebrandtia albiflava DSM 45044 [VLLL]
557805
557732
-
Ala
CGC
[ENA]
¡û
>W2012371454
WLVL01000016
Actinomycetota
Arsenicicoccus sp. MKL-02 [WLVL]
3101
3028
-
Ala
CGC
[ENA]
¡û
>W2012442223
WUEK01000013
Actinomycetota
Nocardioides sp. YIM 123512 [WUEK]
129849
129775
-
Ala
CGC
[ENA]
¡û
>W2110051284
BNAC01000004
Actinomycetota
Klenkia taihuensis CGMCC 1.12303 [BNAC]
647309
647383
+
Ala
CGC
[ENA]
¡û
>W2110063486
BOPU01000009
Actinomycetota
Phycicoccus sp. DTK01 [BOPU]
80889
80815
-
Ala
CGC
[ENA]
¡û
>W2110133156
CAKASO010000001
Actinomycetota
Nocardioides sp. Leaf374 [CAKASO]
184702
184628
-
Ala
CGC
[ENA]
¡û
>W2110138295
JAAFNI010000001
Actinomycetota
Dermatophilus congolensis BTSK40 [JAAFNI]
1712194
1712119
-
Ala
CGC
[ENA]
¡û
>W2110138344
JAAFNJ010000001
Actinomycetota
Dermatophilus congolensis BTSK39 [JAAFNJ]
1711822
1711747
-
Ala
CGC
[ENA]
¡û
>W2110138367
JAAFNK010000001
Actinomycetota
Dermatophilus congolensis BTSK38 [JAAFNK]
921236
921311
+
Ala
CGC
[ENA]
¡û
>W2110138442
JAAFNL010000001
Actinomycetota
Dermatophilus congolensis BTSK37 [JAAFNL]
1712798
1712723
-
Ala
CGC
[ENA]
¡û
>W2110138465
JAAFNM010000001
Actinomycetota
Dermatophilus congolensis BTSK36 [JAAFNM]
927904
927979
+
Ala
CGC
[ENA]
¡û
>W2110138540
JAAFNN010000001
Actinomycetota
Dermatophilus congolensis BTSK35 [JAAFNN]
1717577
1717502
-
Ala
CGC
[ENA]
¡û
>W2110138588
JAAFNO010000001
Actinomycetota
Dermatophilus congolensis BTSK34 [JAAFNO]
1710883
1710808
-
Ala
CGC
[ENA]
¡û
>W2110138611
JAAFNP010000001
Actinomycetota
Dermatophilus congolensis BTSK33 [JAAFNP]
917222
917297
+
Ala
CGC
[ENA]
¡û
>W2110138689
JAAFNQ010000001
Actinomycetota
Dermatophilus congolensis BTSK32 [JAAFNQ]
1714934
1714859
-
Ala
CGC
[ENA]
¡û
>W2110138738
JAAFNR010000001
Actinomycetota
Dermatophilus congolensis BTSK31 [JAAFNR]
1711618
1711543
-
Ala
CGC
[ENA]
¡û
>W2110138787
JAAFNS010000001
Actinomycetota
Dermatophilus congolensis BTSK30 [JAAFNS]
1717287
1717212
-
Ala
CGC
[ENA]
¡û
>W2110138810
JAAFNT010000001
Actinomycetota
Dermatophilus congolensis BTSK29 [JAAFNT]
916702
916777
+
Ala
CGC
[ENA]
¡û
>W2110138882
JAAFNU010000001
Actinomycetota
Dermatophilus congolensis BTSK28 [JAAFNU]
1714174
1714099
-
Ala
CGC
[ENA]
¡û
>W2110138905
JAAFNV010000001
Actinomycetota
Dermatophilus congolensis BTSK27 [JAAFNV]
918584
918659
+
Ala
CGC
[ENA]
¡û
>W2110138954
JAAFNW010000001
Actinomycetota
Dermatophilus congolensis BTSK26 [JAAFNW]
922492
922567
+
Ala
CGC
[ENA]
¡û
>W2110139003
JAAFNX010000001
Actinomycetota
Dermatophilus congolensis BTSK25 [JAAFNX]
919544
919619
+
Ala
CGC
[ENA]
¡û
>W2110139046
JAAFNY010000001
Actinomycetota
Dermatophilus congolensis BTSK24 [JAAFNY]
921276
921351
+
Ala
CGC
[ENA]
¡û
>W2110139121
JAAFNZ010000001
Actinomycetota
Dermatophilus congolensis BTSK23 [JAAFNZ]
1715634
1715559
-
Ala
CGC
[ENA]
¡û
>W2110139173
JAAFOA010000001
Actinomycetota
Dermatophilus congolensis BTSK22 [JAAFOA]
1715406
1715331
-
Ala
CGC
[ENA]
¡û
>W2110139222
JAAFOB010000001
Actinomycetota
Dermatophilus congolensis BTSK21 [JAAFOB]
1693523
1693448
-
Ala
CGC
[ENA]
¡û
>W2110139274
JAAFOC010000001
Actinomycetota
Dermatophilus congolensis BTSK20 [JAAFOC]
1716215
1716140
-
Ala
CGC
[ENA]
¡û
>W2110139297
JAAFOD010000001
Actinomycetota
Dermatophilus congolensis BTSK19 [JAAFOD]
923159
923234
+
Ala
CGC
[ENA]
¡û
>W2110139346
JAAFOE010000001
Actinomycetota
Dermatophilus congolensis BTSK18 [JAAFOE]
920837
920912
+
Ala
CGC
[ENA]
¡û
>W2110139421
JAAFOF010000001
Actinomycetota
Dermatophilus congolensis BTSK17 [JAAFOF]
1711869
1711794
-
Ala
CGC
[ENA]
¡û
>W2110139470
JAAFOG010000001
Actinomycetota
Dermatophilus congolensis BTSK16 [JAAFOG]
1714712
1714637
-
Ala
CGC
[ENA]
¡û
>W2110139519
JAAFOH010000001
Actinomycetota
Dermatophilus congolensis BTSK15 [JAAFOH]
1716805
1716730
-
Ala
CGC
[ENA]
¡û
>W2110139542
JAAFOI010000001
Actinomycetota
Dermatophilus congolensis BTSK14 [JAAFOI]
919963
920038
+
Ala
CGC
[ENA]
¡û
>W2110139591
JAAFOJ010000001
Actinomycetota
Dermatophilus congolensis BTSK13 [JAAFOJ]
921819
921894
+
Ala
CGC
[ENA]
¡û
>W2110139640
JAAFOK010000001
Actinomycetota
Dermatophilus congolensis BTSK12 [JAAFOK]
920580
920655
+
Ala
CGC
[ENA]
¡û
>W2110139689
JAAFOL010000001
Actinomycetota
Dermatophilus congolensis BTSK11 [JAAFOL]
921762
921837
+
Ala
CGC
[ENA]
¡û
>W2110139764
JAAFOM010000001
Actinomycetota
Dermatophilus congolensis BTSK10 [JAAFOM]
1716701
1716626
-
Ala
CGC
[ENA]
¡û
>W2110139813
JAAFON010000001
Actinomycetota
Dermatophilus congolensis BTSK9 [JAAFON]
1713137
1713062
-
Ala
CGC
[ENA]
¡û
>W2110139862
JAAFOO010000001
Actinomycetota
Dermatophilus congolensis BTSK8 [JAAFOO]
1694511
1694436
-
Ala
CGC
[ENA]
¡û
>W2110139911
JAAFOP010000001
Actinomycetota
Dermatophilus congolensis BTSK7 [JAAFOP]
1711581
1711506
-
Ala
CGC
[ENA]
¡û
>W2110139959
JAAFOQ010000001
Actinomycetota
Dermatophilus congolensis BTSK6 [JAAFOQ]
1715598
1715523
-
Ala
CGC
[ENA]
¡û
>W2110139982
JAAFOR010000001
Actinomycetota
Dermatophilus congolensis BTSK5 [JAAFOR]
919431
919506
+
Ala
CGC
[ENA]
¡û
>W2110140031
JAAFOS010000001
Actinomycetota
Dermatophilus congolensis BTSK4 [JAAFOS]
917943
918018
+
Ala
CGC
[ENA]
¡û
>W2110140106
JAAFOT010000001
Actinomycetota
Dermatophilus congolensis BTSK3 [JAAFOT]
1714547
1714472
-
Ala
CGC
[ENA]
¡û
>W2110140129
JAAFOU010000001
Actinomycetota
Dermatophilus congolensis BTSK2 [JAAFOU]
918654
918729
+
Ala
CGC
[ENA]
¡û
>W2110140178
JAAFOV010000001
Actinomycetota
Dermatophilus congolensis BTSK1 [JAAFOV]
918622
918697
+
Ala
CGC
[ENA]
¡û
>W2110522546
JAGEKN010000005
Actinomycetota
Allobranchiibius sp. GilTou38 [JAGEKN]
41596
41521
-
Ala
CGC
[ENA]
¡û
>W2110553107
JAGINT010000001
Actinomycetota
Kribbella aluminosa DSM 18824 [JAGINT]
1132631
1132708
+
Ala
CGC
[ENA]
¡û
>W1510015648
BBRE01000001
Actinomycetota
Demequina oxidasica NBRC 106264 [BBRE]
712883
712808
-
Ala
CGC
[ENA]
¡û
>W1510015682
BBRF01000001
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
1218869
1218944
+
Ala
CGC
[ENA]
¡û
>C231534524
CP110615
Actinomycetota
Rhodococcus sp. 75 [CP110615]
2697339
2697265
-
Ala
CGC
-
¡û
>C231555821
CP114065
Actinomycetota
Kribbella sp. CA-293567 [CP114065]
1651376
1651451
+
Ala
CGC
-
¡û
>C241139282
CP049935
Actinomycetota
Phycicoccus sp. HDW14 [CP049935]
2552367
2552293
-
Ala
CGC
-
¡û
>C241201862
CP107881
Actinomycetota
Kribbella sp. NBC_00482 [CP107881]
737517
737444
-
Ala
CGC
-
¡û
>C241204624
CP107954
Actinomycetota
Kribbella sp. NBC_00382 [CP107954]
781455
781380
-
Ala
CGC
-
¡û
>C241205421
CP107975
Actinomycetota
Kribbella sp. NBC_00359 [CP107975]
4259101
4259174
+
Ala
CGC
-
¡û
>C241210326
CP108487
Actinomycetota
Kribbella sp. NBC_01245 [CP108487]
7428124
7428201
+
Ala
CGC
-
¡û
>C241212666
CP108996
Actinomycetota
Kribbella sp. NBC_00709 [CP108996]
1452899
1452824
-
Ala
CGC
-
¡û
>C241216115
CP109437
Actinomycetota
Kribbella sp. NBC_01484 [CP109437]
1061570
1061497
-
Ala
CGC
-
¡û
>W2310030148
BSUJ01000001
Actinomycetota
Arsenicicoccus piscis NBRC 105830 [BSUJ]
2547742
2547667
-
Ala
CGC
[ENA]
¡û
>W1710506066
FMUH01000001
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
383808
383733
-
Ala
CGC
[ENA]
¡û
>W1710564154
FOQG01000035
Actinomycetota
Nocardioides psychrotolerans [FOQG]
12240
12315
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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