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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267375 (58 seq.)
>W1710900547
LNKA01000019
Gammaproteobacteria
Legionella adelaidensis [LNKA]
138793
138718
-
Asn
GTT
[ENA]
¡û
>W1710919569
LNXT01000005
Gammaproteobacteria
Legionella birminghamensis [LNXT]
98641
98566
-
Asn
GTT
[ENA]
¡û
>W1710919712
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
2633936
2633861
-
Asn
GTT
[ENA]
¡û
>W1710919755
LNXX01000043
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
418098
418173
+
Asn
GTT
[ENA]
¡û
>W1710919972
LNYC01000072
Gammaproteobacteria
Legionella geestiana [LNYC]
24221
24296
+
Asn
GTT
[ENA]
¡û
>W1710920025
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
502304
502229
-
Asn
GTT
[ENA]
¡û
>W1710920210
LNYI01000057
Gammaproteobacteria
Legionella lansingensis [LNYI]
45814
45889
+
Asn
GTT
[ENA]
¡û
>W1710920233
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2094527
2094452
-
Asn
GTT
[ENA]
¡û
>W1710920351
LNYM01000009
Gammaproteobacteria
Legionella micdadei [LNYM]
286458
286383
-
Asn
GTT
[ENA]
¡û
>W1710920478
LNYP01000023
Gammaproteobacteria
Legionella oakridgensis [LNYP]
199
124
-
Asn
GTT
[ENA]
¡û
>W1710920580
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
567077
567002
-
Asn
GTT
[ENA]
¡û
>W1710920651
LNYT01000022
Gammaproteobacteria
Legionella rubrilucens [LNYT]
429534
429459
-
Asn
GTT
[ENA]
¡û
>W1710920866
LNYZ01000005
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
126428
126353
-
Asn
GTT
[ENA]
¡û
>C171110841
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
36731
36656
-
Asn
GTT
-
¡û
>C171114424
CP020894
Gammaproteobacteria
Legionella longbeachae F1157CHC [CP020894]
2459419
2459494
+
Asn
GTT
-
¡û
>W141221003
AZYK01000098
Gammaproteobacteria
Legionella oakridgensis RV-2-2007 [AZYK]
9000
9075
+
Asn
GTT
[ENA]
¡û
>C181225061
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
2920709
2920784
+
Asn
GTT
-
¡û
>C191159066
CP038271
Gammaproteobacteria
Legionella geestiana 1308 [CP038271]
1379728
1379803
+
Asn
GTT
-
¡û
>C191209833
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
3068509
3068584
+
Asn
GTT
-
¡û
>W141558776
JHWF01000003
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
46031
46106
+
Asn
GTT
[ENA]
¡û
>W141561520
JHYM01000012
Gammaproteobacteria
Legionella cherrii DSM 19213 [JHYM]
166893
166818
-
Asn
GTT
[ENA]
¡û
>C141003228
CP004006
Gammaproteobacteria
Legionella oakridgensis ATCC 33761 = DSM 21215 [CP004006]
2636868
2636943
+
Asn
GTT
[Ensembl]
¡û
>W1910814177
MVJN01000003
Gammaproteobacteria
Legionella quinlivanii ID143958 [MVJN]
313346
313421
+
Asn
GTT
[ENA]
¡û
>W1911662106
QFGD01000002
Gammaproteobacteria
Legionella taurinensis WH05 [QFGD]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911662147
QFGE01000002
Gammaproteobacteria
Legionella taurinensis WH04 [QFGE]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911662229
QFGG01000002
Gammaproteobacteria
Legionella taurinensis WH02 [QFGG]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911662259
QFGH01000001
Gammaproteobacteria
Legionella taurinensis WH01 [QFGH]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911662311
QFGI01000002
Gammaproteobacteria
Legionella taurinensis WC04 [QFGI]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911662341
QFGJ01000001
Gammaproteobacteria
Legionella taurinensis WC03 [QFGJ]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911662393
QFGK01000002
Gammaproteobacteria
Legionella taurinensis WC02 [QFGK]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911662434
QFGL01000002
Gammaproteobacteria
Legionella taurinensis WC01 [QFGL]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1911824225
QZWB01000006
Gammaproteobacteria
Legionella taurinensis 4570-18-6 [QZWB]
94848
94773
-
Asn
GTT
[ENA]
¡û
>W1911824248
QZWC01000004
Gammaproteobacteria
Legionella taurinensis 4567-18-4 [QZWC]
94848
94773
-
Asn
GTT
[ENA]
¡û
>W1810531345
QCXK01000001
Gammaproteobacteria
Legionella taurinensis Genessee01 [QCXK]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1810531397
QCXL01000002
Gammaproteobacteria
Legionella taurinensis Genessee02 [QCXL]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1810531438
QCXM01000002
Gammaproteobacteria
Legionella taurinensis Genessee03 [QCXM]
222290
222215
-
Asn
GTT
[ENA]
¡û
>W1810531479
QCXN01000002
Gammaproteobacteria
Legionella taurinensis Genessee04 [QCXN]
222290
222215
-
Asn
GTT
[ENA]
¡û
>WENV040918
AACY022117943
Marine microbial communities from Global Ocean Sampling (GOS)
834
757
-
Asn
GTT
[ENA]
>W1610580123
LBAX01000003
Gammaproteobacteria
Legionella jordanis [LBAX]
289838
289763
-
Asn
GTT
[ENA]
¡û
>W1610584592
LCUA01000013
Gammaproteobacteria
Legionella oakridgensis [LCUA]
62783
62858
+
Asn
GTT
[ENA]
¡û
>W1610584640
LCUB01000005
Gammaproteobacteria
Legionella micdadei [LCUB]
206
131
-
Asn
GTT
[ENA]
¡û
>W1610760534
LNKA01000019
Gammaproteobacteria
Legionella adelaidensis [LNKA]
138793
138718
-
Asn
GTT
[ENA]
¡û
>W1610777467
LNXT01000005
Gammaproteobacteria
Legionella birminghamensis [LNXT]
98641
98566
-
Asn
GTT
[ENA]
¡û
>W1610777610
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
2633936
2633861
-
Asn
GTT
[ENA]
¡û
>W1610777653
LNXX01000043
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
418098
418173
+
Asn
GTT
[ENA]
¡û
>W1610777870
LNYC01000072
Gammaproteobacteria
Legionella geestiana [LNYC]
24221
24296
+
Asn
GTT
[ENA]
¡û
>W1610777923
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
502304
502229
-
Asn
GTT
[ENA]
¡û
>W1610778108
LNYI01000057
Gammaproteobacteria
Legionella lansingensis [LNYI]
45814
45889
+
Asn
GTT
[ENA]
¡û
>W1610778131
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2094527
2094452
-
Asn
GTT
[ENA]
¡û
>W1610778249
LNYM01000009
Gammaproteobacteria
Legionella micdadei [LNYM]
286458
286383
-
Asn
GTT
[ENA]
¡û
>W1610778376
LNYP01000023
Gammaproteobacteria
Legionella oakridgensis [LNYP]
199
124
-
Asn
GTT
[ENA]
¡û
>W1610778478
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
567077
567002
-
Asn
GTT
[ENA]
¡û
>W1610778549
LNYT01000022
Gammaproteobacteria
Legionella rubrilucens [LNYT]
429534
429459
-
Asn
GTT
[ENA]
¡û
>W1610778764
LNYZ01000005
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
126428
126353
-
Asn
GTT
[ENA]
¡û
>W1710539373
FNVH01000004
Gammaproteobacteria
Legionella quinlivanii DSM 21216 [FNVH]
59155
59080
-
Asn
GTT
[ENA]
¡û
>W1710699135
LBAX01000003
Gammaproteobacteria
Legionella jordanis [LBAX]
289838
289763
-
Asn
GTT
[ENA]
¡û
>W1710703783
LCUA01000013
Gammaproteobacteria
Legionella oakridgensis [LCUA]
62783
62858
+
Asn
GTT
[ENA]
¡û
>W1710703831
LCUB01000005
Gammaproteobacteria
Legionella micdadei [LCUB]
206
131
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK