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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267416 (29 seq.)
>W1710867069
LMHZ01000007
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
99783
99858
+
Thr
TGT
[ENA]
¡û
>W1710875453
LMOJ01000025
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
121959
121884
-
Thr
TGT
[ENA]
¡û
>WENV180017549
FSXF01000574
[FSXF] metagenome; soil
12397
12472
+
Thr
TGT
[ENA]
¢þ
>WENV180018315
FSYV01000544
[FSYV] metagenome; soil
36446
36371
-
Thr
TGT
[ENA]
¢þ
>WENV180032707
FTKD01000022
[FTKD] metagenome; soil
62801
62726
-
Thr
TGT
[ENA]
¢þ
>WENV180040671
LLBZ010005673
[LLBZ] soil metagenome; soil from tomato rhizosphere
4213
4288
+
Thr
TGT
[ENA]
¢þ
>W141093966
AVCC01000032
Betaproteobacteria
Herminiimonas sp. CN [AVCC]
15682
15607
-
Thr
TGT
[ENA]
¡û
>WENV183696812
OUMJ01000012
[OUMJ] metagenome; soil
45556
45631
+
Thr
TGT
[ENA]
¢þ
>WENV183697540
OUNK010000634
[OUNK] metagenome; soil
247
172
-
Thr
TGT
[ENA]
¢þ
>WENV183697575
OUNK010002539
[OUNK] metagenome; soil
276
351
+
Thr
TGT
[ENA]
¢þ
>WENV170558860
CXWL01096225
[CXWL] groundwater metagenome; biofilm material
6496
6421
-
Thr
TGT
[ENA]
¢þ
>C181163944
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
6284661
6284586
-
Thr
TGT
-
¡û
>C191125939
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
2799355
2799430
+
Thr
TGT
-
¡û
>C191150810
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
6635962
6635887
-
Thr
TGT
-
¡û
>C191157302
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
4062094
4062169
+
Thr
TGT
-
¡û
>C191173966
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
5260124
5260199
+
Thr
TGT
-
¡û
>W1910548781
FZOT01000012
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
68407
68332
-
Thr
TGT
[ENA]
¡û
>W1911619000
PPXQ01000015
Betaproteobacteria
Massilia sp. Mn16-1_5 [PPXQ]
79022
79097
+
Thr
TGT
[ENA]
¡û
>W1911802750
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
3355246
3355171
-
Thr
TGT
[ENA]
¡û
>W1911802793
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3139597
3139522
-
Thr
TGT
[ENA]
¡û
>W1911802836
QYUP01000028
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
3709
3784
+
Thr
TGT
[ENA]
¡û
>W1810659459
QJKB01000006
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
273837
273912
+
Thr
TGT
[ENA]
¡û
>C151092627
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
4238239
4238164
-
Thr
TGT
-
¡û
>W1610729415
LMHZ01000007
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
99783
99858
+
Thr
TGT
[ENA]
¡û
>W1610737799
LMOJ01000025
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
121959
121884
-
Thr
TGT
[ENA]
¡û
>W1710515873
FNCD01000008
Betaproteobacteria
Duganella sp. OV458 [FNCD]
247319
247244
-
Thr
TGT
[ENA]
¡û
>W1710519291
FNEQ01000004
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
246686
246761
+
Thr
TGT
[ENA]
¡û
>W1710557561
FOLD01000001
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
348525
348450
-
Thr
TGT
[ENA]
¡û
>W1710578427
FPBO01000031
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
81321
81246
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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