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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267483 (7 seq.)
>WENV170618195
FUWD012957576
[FUWD] metagenome; unknown
302
227
-
Lys
TTT
[ENA]
¡û
>WENV170619851
FUWD013022133
[FUWD] metagenome; unknown
5685
5758
+
Lys
TTT
[ENA]
¡û
>WENV170627972
FUWD013240303
[FUWD] metagenome; unknown
5685
5758
+
Lys
TTT
[ENA]
¡û
>SRA1023715
SRR035084.158859
454 Sequencing (SRP001805)
133
206
+
Lys
TTT
[SRA]
>SRA1023878
SRR035084.198542
454 Sequencing (SRP001805)
302
227
-
Lys
TTT
[SRA]
>SRA1028716
SRR035086.407712
454 Sequencing (SRP001807)
194
119
-
Lys
TTT
[SRA]
>SRA1051360
SRR035096.151643
454 Sequencing (SRP001817)
86
11
-
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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