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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267488 (7 seq.)
>WENV180380886
OBOR01044375
[OBOR] marine metagenome; ENVO 00002227
169
96
-
Pro
TGG
[ENA]
¡û
>WENV170479165
CEVK01190171
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
230
305
+
Pro
TGG
[ENA]
¡û
>WENV170488187
CEVO01125053
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2138
2063
-
Pro
TGG
[ENA]
¡û
>WENV170621146
FUWD013050271
[FUWD] metagenome; unknown
2124
2051
-
Pro
TGG
[ENA]
¡û
>WENV170629315
FUWD013266925
[FUWD] metagenome; unknown
1572
1645
+
Pro
TGG
[ENA]
¡û
>SRA1023800
SRR035084.179174
454 Sequencing (SRP001805)
102
29
-
Pro
TGG
[SRA]
>SRA1024870
SRR035084.425569
454 Sequencing (SRP001805)
275
348
+
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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