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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267489 (7 seq.)
>W1711138700
LVEB01000126
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
300
228
-
Ala
TGC
[ENA]
¡û
>WENV170626988
FUWD013230635
[FUWD] metagenome; unknown
24243
24317
+
Ala
TGC
[ENA]
¡û
>WENV170628227
FUWD013243720
[FUWD] metagenome; unknown
84812
84886
+
Ala
TGC
[ENA]
¡û
>SRA1023842
SRR035084.188315
454 Sequencing (SRP001805)
183
257
+
Ala
TGC
[SRA]
>SRA1025165
SRR035084.503307
454 Sequencing (SRP001805)
172
98
-
Ala
TGC
[SRA]
>C10105610
CP001928
Chlamydiota
Waddlia chondrophila WSU 86-1044 [CP001928]
1332435
1332363
-
Ala
TGC
[Ensembl]
¡û
>W1610949740
LVEB01000126
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
300
228
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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