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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267575 (20 seq.)
>W1711191101
LWSI01000057
Planctomycetota
Mariniblastus fucicola FC18 [LWSI]
90058
89985
-
Lys
TTT
[ENA]
¡û
>w027449
ABCE01000025
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
46167
46090
-
Lys
TTT
[ENA]
¡û
>WENV181307533
OFIQ01017918
[OFIQ] marine metagenome; seawater
44
117
+
Lys
TTT
[ENA]
¡û
>WENV183810027
PVBE011443003
[PVBE] marine metagenome; water
358
284
-
Lys
TTT
[ENA]
¡û
>WENV170015045
AZIC01019302
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
2592
2666
+
Lys
TTT
[ENA]
¡û
>WENV170121184
CENL01054721
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
146588
146514
-
Lys
TTT
[ENA]
¡û
>WENV170383728
CETX01139903
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1118
1044
-
Lys
TTT
[ENA]
¡û
>WENV170621650
FUWD013067262
[FUWD] metagenome; unknown
85
11
-
Lys
TTT
[ENA]
¡û
>WENV170629841
FUWD013283113
[FUWD] metagenome; unknown
85
11
-
Lys
TTT
[ENA]
¡û
>SRA1026843
SRR035086.7388
454 Sequencing (SRP001807)
125
52
-
Lys
TTT
[SRA]
>SRA1028731
SRR035086.412306
454 Sequencing (SRP001807)
95
21
-
Lys
TTT
[SRA]
>W2011610612
SJPP01000001
Planctomycetota
Planctomycetes bacterium CA54 [SJPP]
3879244
3879316
+
Lys
TTT
[ENA]
¡û
>W2012143758
VTSR01000011
Planctomycetota
Gimesia sp. JC646 [VTSR]
200485
200559
+
Lys
TTT
[ENA]
¡û
>C241043983
CP036276
Planctomycetota
Symmachiella dynata Mal52 [CP036276]
6087019
6086947
-
Lys
TTT
-
¡û
>C241044551
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
4315188
4315262
+
Lys
TTT
-
¡û
>C241069940
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
4496725
4496799
+
Lys
TTT
-
¡û
>C241070055
CP042912
Planctomycetota
Mariniblastus fucicola FC18 [CP042912]
3072517
3072590
+
Lys
TTT
-
¡û
>C241083578
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
7551611
7551537
-
Lys
TTT
-
¡û
>C241083653
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
3202492
3202418
-
Lys
TTT
-
¡û
>W1610992704
LWSI01000057
Planctomycetota
Mariniblastus fucicola FC18 [LWSI]
90058
89985
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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