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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267601 (14 seq.)
>w027420
ABCE01000005
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
255169
255094
-
Ala
TGC
[ENA]
¡û
>WENV180343872
OBLK01118944
[OBLK] soil metagenome; Clay
230
158
-
Ala
TGC
[ENA]
¡û
>WENV170121009
CENL01037920
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175795
175723
-
Ala
TGC
[ENA]
¡û
>WENV170493257
CEVQ01348040
[CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
98
170
+
Ala
TGC
[ENA]
¡û
>WENV170603320
FUWD010301585
[FUWD] metagenome; unknown
187
115
-
Ala
TGC
[ENA]
¡û
>SRA1027431
SRR035086.124227
454 Sequencing (SRP001807)
92
20
-
Ala
TGC
[SRA]
>W2012143725
VTSR01000001
Planctomycetota
Gimesia sp. JC646 [VTSR]
279750
279678
-
Ala
TGC
[ENA]
¡û
>C241044014
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
2208597
2208669
+
Ala
TGC
-
¡û
>C241044164
CP036281
Planctomycetota
Polystyrenella longa Pla110 [CP036281]
1941273
1941345
+
Ala
TGC
-
¡û
>C241044508
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
2708975
2708903
-
Ala
TGC
-
¡û
>C241044531
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
2162380
2162452
+
Ala
TGC
-
¡û
>C241069921
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
2181034
2181106
+
Ala
TGC
-
¡û
>C241083591
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
1648006
1647934
-
Ala
TGC
-
¡û
>C241083634
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5518429
5518357
-
Ala
TGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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