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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267606 (21 seq.)
>w027456
ABCE01000039
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
33494
33571
+
Ala
GGC
[ENA]
¡û
>WENV183627719
OOGL01031850
[OOGL] marine metagenome; sea ice
427
354
-
Ala
GGC
[ENA]
¡û
>WENV170014953
AZIC01005183
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
12351
12424
+
Ala
GGC
[ENA]
¡û
>WENV170121091
CENL01049047
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10611
10538
-
Ala
GGC
[ENA]
¡û
>WENV170621939
FUWD013080192
[FUWD] metagenome; unknown
1048
1121
+
Ala
GGC
[ENA]
¡û
>WENV170630135
FUWD013295548
[FUWD] metagenome; unknown
1048
1121
+
Ala
GGC
[ENA]
¡û
>SRA1027524
SRR035086.141159
454 Sequencing (SRP001807)
416
489
+
Ala
GGC
[SRA]
>SRA1028646
SRR035086.384559
454 Sequencing (SRP001807)
299
226
-
Ala
GGC
[SRA]
>SRA1049524
SRR035095.90367
454 Sequencing (SRP001816)
428
501
+
Ala
GGC
[SRA]
>W2012143723
VTSR01000001
Planctomycetota
Gimesia sp. JC646 [VTSR]
655440
655513
+
Ala
GGC
[ENA]
¡û
>C201134540
CP043547
Planctomycetota
Planctomycetales bacterium 10988 [CP043547]
4661825
4661898
+
Ala
GGC
-
¡û
>C241004097
AP021861
Planctomycetota
Lacipirellula parvula PX69 [AP021861]
2818705
2818778
+
Ala
GGC
-
¡û
>C241043723
CP036263
Planctomycetota
Adhaeretor mobilis HG15A2 [CP036263]
2729455
2729528
+
Ala
GGC
-
¡û
>C241044063
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
1787208
1787135
-
Ala
GGC
-
¡û
>C241044066
CP036278
Planctomycetota
Aeoliella mucimassa Pan181 [CP036278]
1258525
1258598
+
Ala
GGC
-
¡û
>C241044182
CP036281
Planctomycetota
Polystyrenella longa Pla110 [CP036281]
5989182
5989109
-
Ala
GGC
-
¡û
>C241044479
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
3133553
3133626
+
Ala
GGC
-
¡û
>C241044580
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
1798654
1798581
-
Ala
GGC
-
¡û
>C241069969
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
1816855
1816782
-
Ala
GGC
-
¡û
>C241083558
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
2065794
2065867
+
Ala
GGC
-
¡û
>C241083627
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5882596
5882669
+
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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