This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267619 (10 seq.)
>w027439
ABCE01000019
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
110598
110523
-
Phe
GAA
[ENA]
¡û
>WENV170121145
CENL01054026
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
348507
348580
+
Phe
GAA
[ENA]
¡û
>SRA1027791
SRR035086.192452
454 Sequencing (SRP001807)
123
51
-
Phe
GAA
[SRA]
>W2012143748
VTSR01000007
Planctomycetota
Gimesia sp. JC646 [VTSR]
78500
78573
+
Phe
GAA
[ENA]
¡û
>C241044026
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
3562690
3562763
+
Phe
GAA
-
¡û
>C241044520
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1301275
1301202
-
Phe
GAA
-
¡û
>C241044545
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
3539534
3539607
+
Phe
GAA
-
¡û
>C241069934
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
3641414
3641487
+
Phe
GAA
-
¡û
>C241083603
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
220494
220421
-
Phe
GAA
-
¡û
>C241083647
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
4057774
4057701
-
Phe
GAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK