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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267635 (62 seq.)
>W1710880246
LMSF01000001
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
384287
384360
+
Arg
CCG
[ENA]
¡û
>W1710880755
LMSO01000008
Actinomycetota
Arthrobacter sp. Soil782 [LMSO]
84628
84555
-
Arg
CCG
[ENA]
¡û
>W1710916196
LNUV01000002
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
125881
125806
-
Arg
CCG
[ENA]
¡û
>W1711124437
LUKC01000041
Actinomycetota
Arthrobacter sp. D4 [LUKC]
416334
416409
+
Arg
CCG
[ENA]
¡û
>W1711184067
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2884415
2884490
+
Arg
CCG
[ENA]
¡û
>W131230329
AUHN01000005
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
403327
403250
-
Arg
CCG
[ENA]
¡û
>W1712049504
NFSC01000031
Actinomycetota
Arthrobacter agilis [NFSC]
429524
429600
+
Arg
CCG
[ENA]
¡û
>W1712049531
NFSD01000029
Actinomycetota
Arthrobacter agilis [NFSD]
62585
62512
-
Arg
CCG
[ENA]
¡û
>C171073449
CP018135
Actinomycetota
Neomicrococcus aestuarii B18 [CP018135]
262726
262651
-
Arg
CCG
-
¡û
>W131236624
AUMN01000001
Actinomycetota
Arthrobacter castelli DSM 16402 [AUMN]
126077
126002
-
Arg
CCG
[ENA]
¡û
>C000065
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
2872934
2873009
+
Arg
CCG
[Ensembl]
¡û
>C001005
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
2947636
2947708
+
Arg
CCG
[Ensembl]
¡û
>WENV180019634
FTCF01000099
[FTCF] metagenome; soil
7952
7879
-
Arg
CCG
[ENA]
¢þ
>W141213338
AZRX01000057
Actinomycetota
Arthrobacter sp. H14 [AZRX]
30040
29965
-
Arg
CCG
[ENA]
¡û
>W141216713
AZVC01000001
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
576725
576650
-
Arg
CCG
[ENA]
¡û
>W141217124
AZVJ01000001
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
194471
194546
+
Arg
CCG
[ENA]
¡û
>C181033511
CP018863
Actinomycetota
Arthrobacter crystallopoietes DSM 20117 [CP018863]
4714189
4714263
+
Arg
CCG
-
¡û
>C181064971
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
3314253
3314326
+
Arg
CCG
-
¡û
>C191056077
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
2107010
2107083
+
Arg
CCG
-
¡û
>C191174056
CP040018
Actinomycetota
Arthrobacter sp. 24S4-2 [CP040018]
3676026
3676099
+
Arg
CCG
-
¡û
>W09108644
ABTM01000001
Actinomycetota
Cryptobacterium curtum DSM 15641 [ABTM]
366526
366601
+
Arg
CCG
[ENA]
¡û
>W1910181574
BJMD01000006
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
128185
128112
-
Arg
CCG
[ENA]
¡û
>W1910373978
FUHW01000033
Actinomycetota
Arthrobacter rhombi B Ar 00.02 [FUHW]
41174
41101
-
Arg
CCG
[ENA]
¡û
>W1911203438
NRGU01000031
Actinomycetota
Glutamicibacter sp. BW78 [NRGU]
356523
356596
+
Arg
CCG
[ENA]
¡û
>W1911532745
OIVI01000316
Actinomycetota
Arthrobacter alpinus [OIVI]
2426
2353
-
Arg
CCG
[ENA]
¡û
>W1911567550
PCPR01000002
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
201661
201734
+
Arg
CCG
[ENA]
¡û
>W1911798250
QYLP01000037
Actinomycetota
Arthrobacter celericrescens NEAU-SA2 [QYLP]
73388
73463
+
Arg
CCG
[ENA]
¡û
>W1911823650
QZVT01000002
Actinomycetota
Arthrobacter cheniae Hz2 [QZVT]
452436
452511
+
Arg
CCG
[ENA]
¡û
>W1810271436
PRKX01000025
Actinomycetota
Arthrobacter agilis CGMCC 1.15723 [PRKX]
62547
62474
-
Arg
CCG
[ENA]
¡û
>W1810569972
QEHL01000008
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
182053
182128
+
Arg
CCG
[ENA]
¡û
>W1810676791
QKMG01000001
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
808853
808780
-
Arg
CCG
[ENA]
¡û
>W1810695582
QLNP01000105
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
208635
208562
-
Arg
CCG
[ENA]
¡û
>W1810786764
QRCU01000038
Actinomycetota
Arthrobacter silvisoli NEAU-SA1 [QRCU]
17580
17505
-
Arg
CCG
[ENA]
¡û
>W1810789453
QRGQ01000016
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
806
731
-
Arg
CCG
[ENA]
¡û
>W10100693
ABUN01000032
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
16435
16510
+
Arg
CCG
[ENA]
¡û
>C10102837
CP001682
Actinomycetota
Cryptobacterium curtum DSM 15641 [CP001682]
707590
707665
+
Arg
CCG
[Ensembl]
¡û
>C10111753
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
1131846
1131771
-
Arg
CCG
[Ensembl]
¡û
>C11101003
CP002379
Actinomycetota
Pseudarthrobacter phenanthrenivorans Sphe3 [CP002379]
2646521
2646596
+
Arg
CCG
[Ensembl]
¡û
>W11100693
ABUN01000032
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
16435
16510
+
Arg
CCG
[ENA]
¡û
>W1510641771
CVLG01000002
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
461101
461176
+
Arg
CCG
[ENA]
¡û
>W1511398225
JTDL01000037
Actinomycetota
Sinomonas humi MUSC 117 [JTDL]
121780
121855
+
Arg
CCG
[ENA]
¡û
>W1511523741
JYCN01000021
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
84113
84186
+
Arg
CCG
[ENA]
¡û
>W1511551628
JZTW01000005
Actinomycetota
Pseudarthrobacter chlorophenolicus Mor30.16 [JZTW]
59788
59715
-
Arg
CCG
[ENA]
¡û
>C161001332
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
4035949
4035874
-
Arg
CCG
-
¡û
>C161035151
CP011402
Actinomycetota
Denitrobacterium detoxificans NPOH1 [CP011402]
1532286
1532211
-
Arg
CCG
[Ensembl]
¡û
>W121086823
AKKK01000031
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
7146
7071
-
Arg
CCG
[ENA]
¡û
>W121123827
BAEG01000085
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
42632
42705
+
Arg
CCG
[ENA]
¡û
>W1610163801
FAUL01000012
Actinomycetota
Hugonella massiliensis AT8 [FAUL]
593106
593181
+
Arg
CCG
[ENA]
¡û
>C131002314
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
3051873
3051948
+
Arg
CCG
[Ensembl]
¡û
>W1610527119
JPWK01000008
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
198344
198269
-
Arg
CCG
[ENA]
¡û
>W1610742592
LMSF01000001
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
384287
384360
+
Arg
CCG
[ENA]
¡û
>W1610743101
LMSO01000008
Actinomycetota
Arthrobacter sp. Soil782 [LMSO]
84628
84555
-
Arg
CCG
[ENA]
¡û
>W1610774435
LNUV01000002
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
125881
125806
-
Arg
CCG
[ENA]
¡û
>W1610989949
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2884415
2884490
+
Arg
CCG
[ENA]
¡û
>W1710165468
FAUL01000012
Actinomycetota
Hugonella massiliensis AT8 [FAUL]
593106
593181
+
Arg
CCG
[ENA]
¡û
>W1710508493
FMWE01000001
Actinomycetota
Arthrobacter sp. UNCCL28 [FMWE]
822974
822899
-
Arg
CCG
[ENA]
¡û
>W1710525693
FNJS01000049
Actinomycetota
Arthrobacter sp. ok909 [FNJS]
13518
13591
+
Arg
CCG
[ENA]
¡û
>W1710526418
FNKH01000002
Actinomycetota
Arthrobacter crystallopoietes [FNKH]
3519695
3519620
-
Arg
CCG
[ENA]
¡û
>W1710541433
FNYI01000001
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
849648
849573
-
Arg
CCG
[ENA]
¡û
>W1710548871
FOEC01000004
Actinomycetota
Denitrobacterium detoxificans [FOEC]
32025
31950
-
Arg
CCG
[ENA]
¡û
>W1710561238
FONZ01000004
Actinomycetota
Flavimobilis marinus [FONZ]
186218
186143
-
Arg
CCG
[ENA]
¡û
>W1710577651
FPAY01000013
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
10539
10466
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK