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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267647 (16 seq.)
>w027443
ABCE01000024
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
103752
103829
+
Thr
TGT
[ENA]
¡û
>WENV170014943
AZIC01004988
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
3674
3601
-
Thr
TGT
[ENA]
¡û
>WENV170121057
CENL01043528
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
246369
246442
+
Thr
TGT
[ENA]
¡û
>WENV170620766
FUWD013038936
[FUWD] metagenome; unknown
1748
1821
+
Thr
TGT
[ENA]
¡û
>WENV170628911
FUWD013256094
[FUWD] metagenome; unknown
1748
1821
+
Thr
TGT
[ENA]
¡û
>WENV170668227
LADL02002044
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
6181
6108
-
Thr
TGT
[ENA]
¡û
>SRA1028555
SRR035086.356879
454 Sequencing (SRP001807)
97
170
+
Thr
TGT
[SRA]
>SRA1028751
SRR035086.424314
454 Sequencing (SRP001807)
125
52
-
Thr
TGT
[SRA]
>W2010502830
JAALXT010000006
Planctomycetota
Rubinisphaera sp. JC658 [JAALXT]
439774
439846
+
Thr
TGT
[ENA]
¡û
>W2012143735
VTSR01000005
Planctomycetota
Gimesia sp. JC646 [VTSR]
396553
396480
-
Thr
TGT
[ENA]
¡û
>C241044042
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
7404611
7404538
-
Thr
TGT
-
¡û
>C241044491
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
7641014
7640941
-
Thr
TGT
-
¡û
>C241044562
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
7090755
7090682
-
Thr
TGT
-
¡û
>C241069951
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
7261903
7261830
-
Thr
TGT
-
¡û
>C241083561
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
4295863
4295936
+
Thr
TGT
-
¡û
>C241083609
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
435935
436008
+
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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