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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267868 (5 seq.)
>WENV170623316
FUWD013145595
[FUWD] metagenome; unknown
295
223
-
Thr
CGT
[ENA]
¡û
>WENV170631579
FUWD013357556
[FUWD] metagenome; unknown
295
223
-
Thr
CGT
[ENA]
¡û
>SRA1037231
SRR035090.98872
454 Sequencing (SRP001811)
126
54
-
Thr
CGT
[SRA]
>SRA1038609
SRR035090.335850
454 Sequencing (SRP001811)
117
189
+
Thr
CGT
[SRA]
>SRA1040957
SRR035091.173820
454 Sequencing (SRP001812)
201
273
+
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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