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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267882 (25 seq.)
>W1710878166
LMQS01000002
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
4133
4058
-
Ala
TGC
[ENA]
¡û
>W1711718087
MTHD01000011
Betaproteobacteria
Azonexus hydrophilus [MTHD]
2020
2095
+
Ala
TGC
[ENA]
¡û
>WENV180285176
OBID01261512
[OBID] metagenome; sludge
202
127
-
Ala
TGC
[ENA]
¢þ
>WENV180285192
OBID01270381
[OBID] metagenome; sludge
282
357
+
Ala
TGC
[ENA]
¢þ
>WENV180285862
OBID01771188
[OBID] metagenome; sludge
76
1
-
Ala
TGC
[ENA]
¢þ
>WENV181379855
OFRD01011916
[OFRD] wastewater metagenome; Exp Tend CN 100WW
913
838
-
Ala
TGC
[ENA]
¢þ
>WENV170646150
JQGG01001674
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
943
868
-
Ala
TGC
[ENA]
¢þ
>WENV170707716
LNAP01030945
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1789
1864
+
Ala
TGC
[ENA]
¢þ
>C191081646
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
569440
569515
+
Ala
TGC
-
¡û
>C191081652
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
757606
757681
+
Ala
TGC
-
¡û
>C191081671
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
2240222
2240147
-
Ala
TGC
-
¡û
>W09100867
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
1152525
1152600
+
Ala
TGC
[ENA]
¡û
>W141819348
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1062116
1062191
+
Ala
TGC
[ENA]
¡û
>W141819350
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1068111
1068186
+
Ala
TGC
[ENA]
¡û
>W141819386
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
211562
211487
-
Ala
TGC
[ENA]
¡û
>C09107778
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
216355
216430
+
Ala
TGC
[Ensembl]
¡û
>C09107789
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
692978
693053
+
Ala
TGC
[Ensembl]
¡û
>SRA1003028
SRR002326.160860
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
22
97
+
Ala
TGC
[SRA]
>SRA1003458
SRR002326.479737
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
72
-1
-
Ala
TGC
[SRA]
>SRA1003599
SRR002327.59901
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
51
126
+
Ala
TGC
[SRA]
>SRA1003662
SRR002327.102830
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
232
157
-
Ala
TGC
[SRA]
>SRA1003852
SRR002327.234449
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
112
187
+
Ala
TGC
[SRA]
>W1511432013
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
823842
823917
+
Ala
TGC
[ENA]
¡û
>W1511432028
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1484458
1484533
+
Ala
TGC
[ENA]
¡û
>W1610740512
LMQS01000002
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
4133
4058
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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