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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267922 (12 seq.)
>W1711137104
LVAY01000353
Lentisphaerota
Lentisphaerales bacterium Lenti_01 [LVAY]
5097
5172
+
Lys
TTT
[ENA]
¡û
>WENV180096779
MTBK01147423
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
355
430
+
Lys
TTT
[ENA]
¡û
>WENV180097110
MTBK01168980
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
142
217
+
Lys
TTT
[ENA]
¡û
>WENV181231402
OFEK01024411
[OFEK] activated sludge metagenome; Anaerobic digester
1315
1390
+
Lys
TTT
[ENA]
¡û
>WENV170720720
LSQX01163640
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5594
5669
+
Lys
TTT
[ENA]
¡û
>WENV170724014
LSQX01289652
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29577
29652
+
Lys
TTT
[ENA]
¡û
>WENV170968248
MTKW01007426
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
459
384
-
Lys
TTT
[ENA]
¡û
>WENV170974119
MTKY01054345
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2126
2201
+
Lys
TTT
[ENA]
¡û
>WENV170979161
MTKZ01078364
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1035
1110
+
Lys
TTT
[ENA]
¡û
>SRA1039702
SRR035090.548354
454 Sequencing (SRP001811)
352
277
-
Lys
TTT
[SRA]
>SRA1039854
SRR035090.583819
454 Sequencing (SRP001811)
354
279
-
Lys
TTT
[SRA]
>W1610948224
LVAY01000353
Lentisphaerota
Lentisphaerales bacterium Lenti_01 [LVAY]
5097
5172
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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