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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268370 (48 seq.)
>W1711677151
MRTH01000047
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
57482
57407
-
His
GTG
[ENA]
¡û
>W1711904563
MZNT01000034
Bacillota
Paenibacillus sp. 32352 [MZNT]
163
88
-
His
GTG
[ENA]
¡û
>W1711904577
MZNT01000063
Bacillota
Paenibacillus sp. 32352 [MZNT]
235
308
+
His
GTG
[ENA]
¡û
>WENV170705911
LNAP01000612
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
38847
38772
-
His
GTG
[ENA]
¡û
>WENV170706300
LNAP01001925
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
188
261
+
His
GTG
[ENA]
¡û
>W141702774
JMLS01000005
Bacillota
Paenibacillus sp. UNC451MF [JMLS]
507
582
+
His
GTG
[ENA]
¡û
>W1910155095
BIMH01000019
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
85249
85174
-
His
GTG
[ENA]
¡û
>W1910832004
MYFO01000022
Bacillota
Paenibacillus sp. MEC069 [MYFO]
91354
91279
-
His
GTG
[ENA]
¡û
>W1911071703
NMQW01000014
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
782
857
+
His
GTG
[ENA]
¡û
>W1911071758
NMQW01000048
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
1027
1102
+
His
GTG
[ENA]
¡û
>W2010088030
BIMH01000019
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
85249
85174
-
His
GTG
[ENA]
¡û
>W2010529645
JAAOIW010000020
Bacillota
Paenibacillus sp. S3N08 [JAAOIW]
111629
111554
-
His
GTG
[ENA]
¡û
>W2010561736
JAASRW010000010
Bacillota
Paenibacillus lupini CECT 8235 [JAASRW]
963
1038
+
His
GTG
[ENA]
¡û
>W2010922124
MYFO01000022
Bacillota
Paenibacillus sp. MEC069 [MYFO]
91354
91279
-
His
GTG
[ENA]
¡û
>W2011001873
NMQW01000014
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
782
857
+
His
GTG
[ENA]
¡û
>W2011001928
NMQW01000048
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
1027
1102
+
His
GTG
[ENA]
¡û
>W2011639545
SMRT01000008
Bacillota
Paenibacillus sp. MS74 [SMRT]
515
590
+
His
GTG
[ENA]
¡û
>W2011639571
SMRT01000024
Bacillota
Paenibacillus sp. MS74 [SMRT]
72514
72439
-
His
GTG
[ENA]
¡û
>W2012037440
VIDW01000023
Bacillota
Paenibacillus sp. tmac-D7 [VIDW]
681
756
+
His
GTG
[ENA]
¡û
>W2012048542
VIWN01000006
Bacillota
Paenibacillus sp. 597 [VIWN]
432720
432647
-
His
GTG
[ENA]
¡û
>W2012098083
VNJI01000014
Bacillota
Paenibacillus sp. JC52 [VNJI]
776
851
+
His
GTG
[ENA]
¡û
>W2012098124
VNJI01000056
Bacillota
Paenibacillus sp. JC52 [VNJI]
976
1051
+
His
GTG
[ENA]
¡û
>W2012098161
VNJI01000068
Bacillota
Paenibacillus sp. JC52 [VNJI]
33905
33830
-
His
GTG
[ENA]
¡û
>W2012328561
WHOD01000051
Bacillota
Paenibacillus sp. LMG 31456 [WHOD]
48003
47928
-
His
GTG
[ENA]
¡û
>W2012402120
WNZX01000019
Bacillota
Paenibacillus validus 2CS3 [WNZX]
87516
87441
-
His
GTG
[ENA]
¡û
>W2012437685
WTUZ01000037
Bacillota
Paenibacillus sp. 5J-6 [WTUZ]
173454
173381
-
His
GTG
[ENA]
¡û
>W2012450043
WUWM01000016
Bacillota
Paenibacillus sp. SJY2 [WUWM]
1384
1459
+
His
GTG
[ENA]
¡û
>W2012450068
WUWM01000030
Bacillota
Paenibacillus sp. SJY2 [WUWM]
72072
71997
-
His
GTG
[ENA]
¡û
>W2110011849
BCPS01000046
Bacillota
Paenibacillus sp. EPM92 [BCPS]
1095
1170
+
His
GTG
[ENA]
¡û
>W2110024869
BMHE01000064
Bacillota
Paenibacillus marchantiophytorum CGMCC 1.15043 [BMHE]
35591
35518
-
His
GTG
[ENA]
¡û
>W2110275723
JACVVD010000002
Bacillota
Paenibacillus sp. WST5 [JACVVD]
1689
1764
+
His
GTG
[ENA]
¡û
>W2110275740
JACVVD010000005
Bacillota
Paenibacillus sp. WST5 [JACVVD]
218
291
+
His
GTG
[ENA]
¡û
>W2110275755
JACVVD010000011
Bacillota
Paenibacillus sp. WST5 [JACVVD]
231596
231521
-
His
GTG
[ENA]
¡û
>W2110300424
JADBDR010000003
Bacillota
Paenibacillus sp. OAS669 [JADBDR]
1749
1824
+
His
GTG
[ENA]
¡û
>W2110300447
JADBDR010000013
Bacillota
Paenibacillus sp. OAS669 [JADBDR]
221733
221658
-
His
GTG
[ENA]
¡û
>C231039408
CP031168
Bacillota
Paenibacillus sp. H1-7 [CP031168]
7819976
7819901
-
His
GTG
-
¡û
>C231039433
CP031168
Bacillota
Paenibacillus sp. H1-7 [CP031168]
7277480
7277405
-
His
GTG
-
¡û
>C231287950
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
5085206
5085131
-
His
GTG
-
¡û
>C231287969
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
4978128
4978053
-
His
GTG
-
¡û
>C231287975
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
4596770
4596697
-
His
GTG
-
¡û
>C231287985
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
3487279
3487204
-
His
GTG
-
¡û
>W1610048265
BBEA01000012
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
681
756
+
His
GTG
[ENA]
¡û
>W1610048343
BBEB01000012
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
681
756
+
His
GTG
[ENA]
¡û
>W1710044775
BBEA01000012
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
681
756
+
His
GTG
[ENA]
¡û
>W1710044853
BBEB01000012
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
681
756
+
His
GTG
[ENA]
¡û
>W1710511861
FMYY01000020
Bacillota
Paenibacillus sp. cl123 [FMYY]
121852
121777
-
His
GTG
[ENA]
¡û
>W1710567928
FOTE01000003
Bacillota
Paenibacillus sp. 1_12 [FOTE]
781
856
+
His
GTG
[ENA]
¡û
>W1710579772
FPIU01000022
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
121856
121781
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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