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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268460 (11 seq.)
>C171074568
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1350461
1350386
-
Lys
TTT
-
¡û
>C171074620
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1386975
1386900
-
Lys
TTT
-
¡û
>C171074672
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1346988
1346913
-
Lys
TTT
-
¡û
>C171074724
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1342711
1342636
-
Lys
TTT
-
¡û
>C171074776
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1386976
1386901
-
Lys
TTT
-
¡û
>C171074828
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1350520
1350445
-
Lys
TTT
-
¡û
>C009850
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1350490
1350415
-
Lys
TTT
[Ensembl]
¡û
>WENV180344313
OBLK01338336
[OBLK] soil metagenome; Clay
157
229
+
Lys
TTT
[ENA]
¢þ
>C151004040
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1347138
1347063
-
Lys
TTT
[Ensembl]
¡û
>C151004076
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2123583
2123658
+
Lys
TTT
[Ensembl]
¡û
>C151004128
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2065279
2065354
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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