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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268460 (7 seq.)
>WENV181163097
OEIO01090578
[OEIO] marine metagenome; sea ice
275
349
+
Thr
CGT
[ENA]
¡û
>WENV170604447
FUWD010399380
[FUWD] metagenome; unknown
366
291
-
Thr
CGT
[ENA]
¡û
>WENV170765684
LWDU01038938
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
21909
21984
+
Thr
CGT
[ENA]
¡û
>WENV170765704
LWDU01039105
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
91
16
-
Thr
CGT
[ENA]
¡û
>W2010491918
JAAKEA010000001
Actinomycetota
Adlercreutzia sp. ZJ138 [JAAKEA]
178567
178492
-
Thr
CGT
[ENA]
¡û
>W2010492011
JAAKEB010000026
Actinomycetota
Adlercreutzia sp. ZJ141 [JAAKEB]
4520
4445
-
Thr
CGT
[ENA]
¡û
>C241092176
CP045119
Actinomycetota
Rubrobacter tropicus SCSIO 52909 [CP045119]
2512117
2512044
-
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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