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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268466 (5 seq.)
>WENV181891209
OGXO01008238
[OGXO] human gut metagenome; faeces
2481
2406
-
Val
TAC
[ENA]
¡û
>WENV170049226
CDZA01051577
[CDZA] gut metagenome; human stools
77
2
-
Val
TAC
[ENA]
¡û
>W2010492283
JAAKEH010000057
Thermodesulfobacteriota
Desulfovibrio sp. ZJ200 [JAAKEH]
7973
8048
+
Val
TAC
[ENA]
¡û
>W2010492285
JAAKEH010000062
Thermodesulfobacteriota
Desulfovibrio sp. ZJ200 [JAAKEH]
5789
5714
-
Val
TAC
[ENA]
¡û
>W2010492328
JAAKEI010000036
Thermodesulfobacteriota
Desulfovibrio sp. ZJ369 [JAAKEI]
25389
25464
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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