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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268485 (90 seq.)
>W1711210239
LXIA01000018
Bacillota
Lentilactobacillus parabuchneri [LXIA]
249239
249313
+
Arg
CCT
[ENA]
¡û
>W1711224729
LXUG01000022
Bacillota
Lentilactobacillus parabuchneri [LXUG]
29224
29150
-
Arg
CCT
[ENA]
¡û
>W1711236383
LYDQ01000022
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
291681
291755
+
Arg
CCT
[ENA]
¡û
>W131241951
BASH01000003
Bacillota
Lentilactobacillus otakiensis JCM 15040 [BASH]
214723
214798
+
Arg
CCT
[ENA]
¡û
>W1711438194
MIQE01000022
Bacillota
Lentilactobacillus sunkii [MIQE]
77439
77513
+
Arg
CCT
[ENA]
¡û
>W1711685958
MSAS01000020
Bacillota
Lentilactobacillus parabuchneri [MSAS]
338039
338113
+
Arg
CCT
[ENA]
¡û
>W1711686016
MSAT01000024
Bacillota
Lentilactobacillus parabuchneri [MSAT]
248536
248610
+
Arg
CCT
[ENA]
¡û
>W1711686132
MSAV01000033
Bacillota
Lentilactobacillus parabuchneri [MSAV]
144751
144825
+
Arg
CCT
[ENA]
¡û
>W1711686189
MSAW01000053
Bacillota
Lentilactobacillus parabuchneri [MSAW]
26711
26785
+
Arg
CCT
[ENA]
¡û
>W1711686233
MSAX01000020
Bacillota
Lentilactobacillus parabuchneri [MSAX]
99362
99436
+
Arg
CCT
[ENA]
¡û
>W1711686305
MSAY01000023
Bacillota
Lentilactobacillus parabuchneri [MSAY]
147233
147307
+
Arg
CCT
[ENA]
¡û
>W1711686363
MSAZ01000021
Bacillota
Lentilactobacillus parabuchneri [MSAZ]
147233
147307
+
Arg
CCT
[ENA]
¡û
>W1711686421
MSBA01000026
Bacillota
Lentilactobacillus parabuchneri [MSBA]
147233
147307
+
Arg
CCT
[ENA]
¡û
>W1711686479
MSBB01000025
Bacillota
Lentilactobacillus parabuchneri [MSBB]
147209
147283
+
Arg
CCT
[ENA]
¡û
>W1711686594
MSBD01000041
Bacillota
Lentilactobacillus parabuchneri [MSBD]
87477
87551
+
Arg
CCT
[ENA]
¡û
>W1711686650
MSBE01000019
Bacillota
Lentilactobacillus parabuchneri [MSBE]
474929
475003
+
Arg
CCT
[ENA]
¡û
>W1711686712
MSBF01000025
Bacillota
Lentilactobacillus parabuchneri [MSBF]
256652
256726
+
Arg
CCT
[ENA]
¡û
>W1711686769
MSBG01000025
Bacillota
Lentilactobacillus parabuchneri [MSBG]
256652
256726
+
Arg
CCT
[ENA]
¡û
>W1711686826
MSBH01000025
Bacillota
Lentilactobacillus parabuchneri [MSBH]
256652
256726
+
Arg
CCT
[ENA]
¡û
>W1711686868
MSBI01000014
Bacillota
Lentilactobacillus parabuchneri [MSBI]
159540
159614
+
Arg
CCT
[ENA]
¡û
>C171034117
CP014912
Bacillota
Secundilactobacillus paracollinoides TMW 1.1979 [CP014912]
3160634
3160560
-
Arg
CCT
-
¡û
>C171034248
CP014924
Bacillota
Secundilactobacillus paracollinoides TMW 1.1995 [CP014924]
3359167
3359093
-
Arg
CCT
-
¡û
>C171084018
CP018796
Bacillota
Lentilactobacillus parabuchneri FAM21731 [CP018796]
1850225
1850299
+
Arg
CCT
-
¡û
>WENV180477995
OBZA01000004
[OBZA] human gut metagenome; faeces
221105
221179
+
Arg
CCT
[ENA]
¢þ
>W141229773
BAOT01000061
Bacillota
Levilactobacillus namurensis str. Chizuka 01 [BAOT]
22748
22824
+
Arg
CCT
[ENA]
¡û
>W1910177178
BJDO01000016
Bacillota
Secundilactobacillus hailunensis 887-11 [BJDO]
37358
37284
-
Arg
CCT
[ENA]
¡û
>W1910177752
BJDZ01000024
Bacillota
Lactiplantibacillus plajomi NBRC 107333 [BJDZ]
20000
20074
+
Arg
CCT
[ENA]
¡û
>W1910177782
BJEA01000001
Bacillota
Lactiplantibacillus modestisalitolerans NBRC 107235 [BJEA]
96432
96358
-
Arg
CCT
[ENA]
¡û
>W1910870889
NCWS01000012
Bacillota
Lentilactobacillus kefiri OG2 [NCWS]
27925
27999
+
Arg
CCT
[ENA]
¡û
>W1910871329
NCXA01000036
Bacillota
Lentilactobacillus parakefiri KR [NCXA]
3529
3455
-
Arg
CCT
[ENA]
¡û
>W1910871480
NCXD01000012
Bacillota
Lentilactobacillus kefiri KR [NCXD]
27925
27999
+
Arg
CCT
[ENA]
¡û
>W1910871717
NCXI01000032
Bacillota
Lentilactobacillus parakefiri OG2 [NCXI]
17639
17565
-
Arg
CCT
[ENA]
¡û
>W1910872040
NDFJ01000002
Bacillota
Lentilactobacillus kefiri Olga [NDFJ]
86099
86173
+
Arg
CCT
[ENA]
¡û
>W1911631832
PUFJ01000021
Bacillota
Secundilactobacillus silagei JCM 19001 DSM 27022 [PUFJ]
74365
74439
+
Arg
CCT
[ENA]
¡û
>W1911631925
PUFL01000004
Bacillota
Lentilactobacillus parakefiri DSM 10551 [PUFL]
23161
23235
+
Arg
CCT
[ENA]
¡û
>W1911761477
QWZQ01000037
Bacillota
Lactiplantibacillus garii FI11369 [QWZQ]
5853
5778
-
Arg
CCT
[ENA]
¡û
>W1810586579
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
758476
758402
-
Arg
CCT
[ENA]
¡û
>C11112251
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
1712619
1712545
-
Arg
CCT
[Ensembl]
¡û
>W1511538809
JZCR01000025
Bacillota
Levilactobacillus spicheri LP38 [JZCR]
137863
137939
+
Arg
CCT
[ENA]
¡û
>W1610031469
AYYV01000086
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
29260
29186
-
Arg
CCT
[ENA]
¡û
>W1610032278
AYZM01000149
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
89506
89430
-
Arg
CCT
[ENA]
¡û
>W1610033407
AZCX01000002
Bacillota
Secundilactobacillus kimchicus JCM 15530 [AZCX]
400531
400605
+
Arg
CCT
[ENA]
¡û
>W1610034834
AZEA01000009
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
14165
14091
-
Arg
CCT
[ENA]
¡û
>W1610035052
AZEE01000030
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
344879
344953
+
Arg
CCT
[ENA]
¡û
>W1610035246
AZEI01000078
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
7302
7226
-
Arg
CCT
[ENA]
¡û
>W1610035469
AZEN01000239
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
29260
29186
-
Arg
CCT
[ENA]
¡û
>W1610035473
AZEN01000267
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
3526
3452
-
Arg
CCT
[ENA]
¡û
>W1610036029
AZEY01000107
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
32791
32717
-
Arg
CCT
[ENA]
¡û
>W1610036214
AZFC01000037
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
44383
44307
-
Arg
CCT
[ENA]
¡û
>W1610036217
AZFD01000122
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
62164
62090
-
Arg
CCT
[ENA]
¡û
>W1610037361
AZFZ01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
28283
28209
-
Arg
CCT
[ENA]
¡û
>W1610037939
AZGK01000003
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
247572
247646
+
Arg
CCT
[ENA]
¡û
>W1610044599
BBAR01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
85688
85762
+
Arg
CCT
[ENA]
¡û
>W1610044722
BBAT01000002
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
283833
283908
+
Arg
CCT
[ENA]
¡û
>W1610044843
BBAV01000061
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
7252
7176
-
Arg
CCT
[ENA]
¡û
>W1610045781
BBBV01000025
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
29192
29118
-
Arg
CCT
[ENA]
¡û
>W1610050051
BBFL01000014
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
72719
72793
+
Arg
CCT
[ENA]
¡û
>C131001726
CP003043
Bacillota
Lentilactobacillus buchneri subsp. silagei CD034 [CP003043]
1709036
1708962
-
Arg
CCT
[Ensembl]
¡û
>W1610528625
JQBJ01000173
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
247600
247674
+
Arg
CCT
[ENA]
¡û
>W1610997965
LXIA01000018
Bacillota
Lentilactobacillus parabuchneri [LXIA]
249239
249313
+
Arg
CCT
[ENA]
¡û
>W1611008693
LXUG01000022
Bacillota
Lentilactobacillus parabuchneri [LXUG]
29224
29150
-
Arg
CCT
[ENA]
¡û
>W1611014528
LYDQ01000022
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
291681
291755
+
Arg
CCT
[ENA]
¡û
>W1730000588
AYYR01000074
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
80955
81029
+
Arg
CCT
[ENA]
¡û
>W1730001489
BBEQ01000010
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
80776
80850
+
Arg
CCT
[ENA]
¡û
>W1710028396
AYYV01000086
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
29260
29186
-
Arg
CCT
[ENA]
¡û
>W1710029205
AYZM01000149
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
89506
89430
-
Arg
CCT
[ENA]
¡û
>W1710030679
AZCX01000002
Bacillota
Secundilactobacillus kimchicus JCM 15530 [AZCX]
400531
400605
+
Arg
CCT
[ENA]
¡û
>W1710031248
AZDM01000037
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
19925
19999
+
Arg
CCT
[ENA]
¡û
>W1710031961
AZEA01000009
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
14165
14091
-
Arg
CCT
[ENA]
¡û
>W1710032179
AZEE01000030
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
344879
344953
+
Arg
CCT
[ENA]
¡û
>W1710032373
AZEI01000078
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
7302
7226
-
Arg
CCT
[ENA]
¡û
>W1710032508
AZEN01000239
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
29260
29186
-
Arg
CCT
[ENA]
¡û
>W1710032512
AZEN01000267
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
3526
3452
-
Arg
CCT
[ENA]
¡û
>W1710033068
AZEY01000107
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
32791
32717
-
Arg
CCT
[ENA]
¡û
>W1710033253
AZFC01000037
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
44383
44307
-
Arg
CCT
[ENA]
¡û
>W1710033256
AZFD01000122
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
62164
62090
-
Arg
CCT
[ENA]
¡û
>W1710034400
AZFZ01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
28283
28209
-
Arg
CCT
[ENA]
¡û
>W1710034978
AZGK01000003
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
247572
247646
+
Arg
CCT
[ENA]
¡û
>W1710041697
BBAR01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
85688
85762
+
Arg
CCT
[ENA]
¡û
>W1710041820
BBAT01000002
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
283833
283908
+
Arg
CCT
[ENA]
¡û
>W1710041941
BBAV01000061
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
7252
7176
-
Arg
CCT
[ENA]
¡û
>W1710042622
BBBV01000025
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
29192
29118
-
Arg
CCT
[ENA]
¡û
>W1710046450
BBFL01000014
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
72719
72793
+
Arg
CCT
[ENA]
¡û
>W1710058480
BCMF01000005
Bacillota
Secundilactobacillus mixtipabuli [BCMF]
73034
73110
+
Arg
CCT
[ENA]
¡û
>W1710058578
BCMG01000013
Bacillota
Secundilactobacillus silagei [BCMG]
12273
12199
-
Arg
CCT
[ENA]
¡û
>W1710058653
BCMI01000003
Bacillota
Secundilactobacillus pentosiphilus IWT25 [BCMI]
119608
119532
-
Arg
CCT
[ENA]
¡û
>W1710058723
BCMJ01000008
Bacillota
Secundilactobacillus silagincola IWT5 [BCMJ]
67446
67520
+
Arg
CCT
[ENA]
¡û
>W1710070334
BCVT01000016
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
22205
22279
+
Arg
CCT
[ENA]
¡û
>W1710081750
BDGB01000099
Bacillota
Lentilactobacillus parakefiri [BDGB]
21658
21732
+
Arg
CCT
[ENA]
¡û
>W1710630215
JQBJ01000173
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
247600
247674
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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