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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268500 (92 seq.)
>W1711088612
LSZB01000048
Bacillota
Clostridium haemolyticum [LSZB]
1720
1643
-
Lys
TTT
[ENA]
¡û
>W1711088635
LSZB01000343
Bacillota
Clostridium haemolyticum [LSZB]
7682
7607
-
Lys
TTT
[ENA]
¡û
>W1711088638
LSZB01000347
Bacillota
Clostridium haemolyticum [LSZB]
237
312
+
Lys
TTT
[ENA]
¡û
>W1711088642
LSZB01000373
Bacillota
Clostridium haemolyticum [LSZB]
330
407
+
Lys
TTT
[ENA]
¡û
>W1711088683
LSZB01000503
Bacillota
Clostridium haemolyticum [LSZB]
582
657
+
Lys
TTT
[ENA]
¡û
>W1711088708
LSZB01000731
Bacillota
Clostridium haemolyticum [LSZB]
308
233
-
Lys
TTT
[ENA]
¡û
>W1711272793
LZFO01000052
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
8930
8855
-
Lys
TTT
[ENA]
¡û
>W1711272797
LZFO01000072
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
297
372
+
Lys
TTT
[ENA]
¡û
>C007086
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
2523844
2523769
-
Lys
TTT
[Ensembl]
¡û
>C007104
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
5324
5249
-
Lys
TTT
[Ensembl]
¡û
>WENV182961404
OKWK01005700
[OKWK] human gut metagenome; stool
532
457
-
Lys
TTT
[ENA]
¢þ
>W141427622
JENN01000018
Bacillota
Clostridium novyi A str. GD211209 [JENN]
38070
37995
-
Lys
TTT
[ENA]
¡û
>W141427652
JENN01000066
Bacillota
Clostridium novyi A str. GD211209 [JENN]
10377
10302
-
Lys
TTT
[ENA]
¡û
>W141427664
JENN01000091
Bacillota
Clostridium novyi A str. GD211209 [JENN]
1361
1286
-
Lys
TTT
[ENA]
¡û
>W141427843
JENQ01000073
Bacillota
Clostridium botulinum C/D str. Sp77 [JENQ]
11291
11216
-
Lys
TTT
[ENA]
¡û
>W141427863
JENQ01000106
Bacillota
Clostridium botulinum C/D str. Sp77 [JENQ]
548
623
+
Lys
TTT
[ENA]
¡û
>W141427871
JENQ01000115
Bacillota
Clostridium botulinum C/D str. Sp77 [JENQ]
931
1006
+
Lys
TTT
[ENA]
¡û
>WENV170688493
LFRM01248241
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1434
1359
-
Lys
TTT
[ENA]
¢þ
>C181136118
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
668097
668172
+
Lys
TTT
-
¡û
>C181136128
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
669043
669118
+
Lys
TTT
-
¡û
>C181159870
CP027782
Bacillota
Clostridium tetani Mfbjulcb2 [CP027782]
2801542
2801467
-
Lys
TTT
-
¡û
>W141732484
JNKC01000016
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
14896
14821
-
Lys
TTT
[ENA]
¡û
>W1910637562
LQGW01000055
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
18966
18891
-
Lys
TTT
[ENA]
¡û
>W1911694081
QMAN01000023
Bacillota
Clostridium tetani 1337 [QMAN]
5722
5647
-
Lys
TTT
[ENA]
¡û
>W1911694082
QMAN01000033
Bacillota
Clostridium tetani 1337 [QMAN]
2
77
+
Lys
TTT
[ENA]
¡û
>W1911694088
QMAN01000038
Bacillota
Clostridium tetani 1337 [QMAN]
166
241
+
Lys
TTT
[ENA]
¡û
>W1911694125
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
283772
283697
-
Lys
TTT
[ENA]
¡û
>W1911694136
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
282770
282695
-
Lys
TTT
[ENA]
¡û
>W1911694154
QMAO01000023
Bacillota
Clostridium tetani 778.17 [QMAO]
128
203
+
Lys
TTT
[ENA]
¡û
>W1911694161
QMAP01000005
Bacillota
Clostridium tetani 2017.061 [QMAP]
45
120
+
Lys
TTT
[ENA]
¡û
>W1911694204
QMAP01000023
Bacillota
Clostridium tetani 2017.061 [QMAP]
5823
5748
-
Lys
TTT
[ENA]
¡û
>W1911694262
QMAQ01000052
Bacillota
Clostridium tetani 202.15 [QMAQ]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911694265
QMAQ01000055
Bacillota
Clostridium tetani 202.15 [QMAQ]
360
285
-
Lys
TTT
[ENA]
¡û
>W1911694282
QMAR01000009
Bacillota
Clostridium tetani 157.15 [QMAR]
362
287
-
Lys
TTT
[ENA]
¡û
>W1911694327
QMAR01000030
Bacillota
Clostridium tetani 157.15 [QMAR]
5725
5650
-
Lys
TTT
[ENA]
¡û
>W1911694358
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
39858
39933
+
Lys
TTT
[ENA]
¡û
>W1911694370
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
40948
41023
+
Lys
TTT
[ENA]
¡û
>W1911694398
QMAS01000033
Bacillota
Clostridium tetani 89.12 [QMAS]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911694408
QMAT01000001
Bacillota
Clostridium tetani 46.1.08 [QMAT]
39858
39933
+
Lys
TTT
[ENA]
¡û
>W1911694452
QMAT01000028
Bacillota
Clostridium tetani 46.1.08 [QMAT]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911694461
QMAU01000006
Bacillota
Clostridium tetani 63.05 [QMAU]
138
213
+
Lys
TTT
[ENA]
¡û
>W1911694498
QMAU01000015
Bacillota
Clostridium tetani 63.05 [QMAU]
38073
38148
+
Lys
TTT
[ENA]
¡û
>W1911694563
QMAV01000037
Bacillota
Clostridium tetani 358.99 [QMAV]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911694579
QMAV01000056
Bacillota
Clostridium tetani 358.99 [QMAV]
166
241
+
Lys
TTT
[ENA]
¡û
>W1911694620
QMAW01000026
Bacillota
Clostridium tetani 75.97 [QMAW]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911694633
QMAW01000040
Bacillota
Clostridium tetani 75.97 [QMAW]
362
287
-
Lys
TTT
[ENA]
¡û
>W1911694680
QMAX01000023
Bacillota
Clostridium tetani 407.86 [QMAX]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911694695
QMAX01000039
Bacillota
Clostridium tetani 407.86 [QMAX]
362
287
-
Lys
TTT
[ENA]
¡û
>W1911694743
QMAY01000019
Bacillota
Clostridium tetani 641.84 [QMAY]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911694756
QMAY01000032
Bacillota
Clostridium tetani 641.84 [QMAY]
362
287
-
Lys
TTT
[ENA]
¡û
>W1911694760
QMAZ01000012
Bacillota
Clostridium tetani 132CV [QMAZ]
5709
5634
-
Lys
TTT
[ENA]
¡û
>W1911694788
QMAZ01000022
Bacillota
Clostridium tetani 132CV [QMAZ]
191735
191660
-
Lys
TTT
[ENA]
¡û
>W1911694856
QMBA01000013
Bacillota
Clostridium tetani 3582 [QMBA]
52518
52593
+
Lys
TTT
[ENA]
¡û
>W1911694871
QMBA01000026
Bacillota
Clostridium tetani 3582 [QMBA]
5732
5657
-
Lys
TTT
[ENA]
¡û
>W1911694901
QMBB01000010
Bacillota
Clostridium tetani TMB2 [QMBB]
5751
5676
-
Lys
TTT
[ENA]
¡û
>W1911694927
QMBB01000022
Bacillota
Clostridium tetani TMB2 [QMBB]
13491
13416
-
Lys
TTT
[ENA]
¡û
>W1911694979
QMBC01000024
Bacillota
Clostridium tetani COR1 [QMBC]
5725
5650
-
Lys
TTT
[ENA]
¡û
>W1911694993
QMBC01000042
Bacillota
Clostridium tetani COR1 [QMBC]
364
289
-
Lys
TTT
[ENA]
¡û
>W1911695036
QMBD01000020
Bacillota
Clostridium tetani B4 [QMBD]
1002
927
-
Lys
TTT
[ENA]
¡û
>W1911695055
QMBD01000024
Bacillota
Clostridium tetani B4 [QMBD]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911695068
QMBE01000009
Bacillota
Clostridium tetani 512-15 [QMBE]
5843
5768
-
Lys
TTT
[ENA]
¡û
>W1911695100
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
90410
90335
-
Lys
TTT
[ENA]
¡û
>W1911695109
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
89480
89405
-
Lys
TTT
[ENA]
¡û
>W1911695278
QMBH01000015
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
370703
370628
-
Lys
TTT
[ENA]
¡û
>W1911695291
QMBH01000026
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911695325
QMBI01000021
Bacillota
Clostridium tetani 1586-U1 [QMBI]
643
718
+
Lys
TTT
[ENA]
¡û
>W1911695350
QMBI01000033
Bacillota
Clostridium tetani 1586-U1 [QMBI]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911695377
QMBJ01000015
Bacillota
Clostridium tetani 4784A [QMBJ]
39944
40019
+
Lys
TTT
[ENA]
¡û
>W1911695406
QMBJ01000036
Bacillota
Clostridium tetani 4784A [QMBJ]
5729
5654
-
Lys
TTT
[ENA]
¡û
>W1911696383
QMDR01000015
Bacillota
Clostridium tetani 3483 [QMDR]
138
213
+
Lys
TTT
[ENA]
¡û
>W1911696429
QMDR01000044
Bacillota
Clostridium tetani 3483 [QMDR]
38003
38078
+
Lys
TTT
[ENA]
¡û
>C151100892
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
2515863
2515788
-
Lys
TTT
[Ensembl]
¡û
>C151100910
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
5610
5535
-
Lys
TTT
[Ensembl]
¡û
>W1510882246
JDRZ01000006
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
1478
1403
-
Lys
TTT
[ENA]
¡û
>W1510882266
JDRZ01000030
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
259
334
+
Lys
TTT
[ENA]
¡û
>W1510882296
JDRZ01000101
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
152
227
+
Lys
TTT
[ENA]
¡û
>W1510882308
JDSA01000014
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
49109
49034
-
Lys
TTT
[ENA]
¡û
>W1510882355
JDSA01000169
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
7722
7647
-
Lys
TTT
[ENA]
¡û
>W1510882359
JDSA01000191
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
47
122
+
Lys
TTT
[ENA]
¡û
>W1510882384
JDSA01000212
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
1622
1547
-
Lys
TTT
[ENA]
¡û
>W1511345180
JRGG01000003
Bacillota
Clostridium tetani C2 [JRGG]
248784
248709
-
Lys
TTT
[ENA]
¡û
>W1511345213
JRGG01000032
Bacillota
Clostridium tetani C2 [JRGG]
21
96
+
Lys
TTT
[ENA]
¡û
>W1511345326
JRGJ01000006
Bacillota
Clostridium tetani ATCC 19406 [JRGJ]
248797
248722
-
Lys
TTT
[ENA]
¡û
>W1511345350
JRGJ01000028
Bacillota
Clostridium tetani ATCC 19406 [JRGJ]
5666
5591
-
Lys
TTT
[ENA]
¡û
>W1511388494
JSWD01000001
Bacillota
Clostridium tetani 184.08 [JSWD]
5649
5574
-
Lys
TTT
[ENA]
¡û
>W1511480241
JWIX01000027
Bacillota
Clostridium tetani A [JWIX]
163411
163336
-
Lys
TTT
[ENA]
¡û
>W1511480270
JWIX01000081
Bacillota
Clostridium tetani A [JWIX]
5708
5633
-
Lys
TTT
[ENA]
¡û
>W1511595669
LBNB01000016
Bacillota
Clostridium tetani ATCC 454 [LBNB]
5581
5506
-
Lys
TTT
[ENA]
¡û
>W1710518428
FNDZ01000013
Bacillota
Proteiniclasticum ruminis [FNDZ]
25286
25361
+
Lys
TTT
[ENA]
¡û
>W1710570823
FOVK01000004
Bacillota
Proteiniclasticum ruminis [FOVK]
15569
15494
-
Lys
TTT
[ENA]
¡û
>W1710586971
FQXP01000015
Bacillota
Clostridium collagenovorans DSM 3089 [FQXP]
230
305
+
Lys
TTT
[ENA]
¡û
>W1710589442
FRAD01000039
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
107
182
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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