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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268513 (51 seq.)
>W1710909682
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
1141567
1141642
+
His
GTG
[ENA]
¡û
>W1711486033
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
1426829
1426904
+
His
GTG
[ENA]
¡û
>W1712003219
NEGB01000010
Gammaproteobacteria
Acinetobacter silvestris ANC 4999 [NEGB]
2745
2670
-
His
GTG
[ENA]
¡û
>W1712003709
NEGI01000009
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
2828
2753
-
His
GTG
[ENA]
¡û
>W131159568
AQVE01000014
Gammaproteobacteria
Thiolinea disciformis DSM 14473 [AQVE]
68748
68823
+
His
GTG
[ENA]
¡û
>W131180636
ARNG01000083
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
66401
66326
-
His
GTG
[ENA]
¡û
>W131225020
AUDG01000002
Gammaproteobacteria
Rheinheimera baltica DSM 14885 [AUDG]
203060
202985
-
His
GTG
[ENA]
¡û
>WENV181414525
OGCL01000580
[OGCL] hot springs metagenome; Hot spring water
163
88
-
His
GTG
[ENA]
¡û
>WENV183704093
PDWI01000030
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22933
22858
-
His
GTG
[ENA]
¡û
>WENV183717271
PDWJ01000667
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
25516
25441
-
His
GTG
[ENA]
¡û
>WENV170965008
MTET01000550
[MTET] soil metagenome; garden soil control
298355
298280
-
His
GTG
[ENA]
¡û
>C191153505
CP037745
Gammaproteobacteria
Rheinheimera sp. D18 [CP037745]
1058477
1058552
+
His
GTG
-
¡û
>W1910637796
LQXQ01000038
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
37816
37891
+
His
GTG
[ENA]
¡û
>W1910921978
NIFO01000030
Gammaproteobacteria
Acinetobacter sp. LW15 [NIFO]
40102
40177
+
His
GTG
[ENA]
¡û
>W1910921983
NIFO01000074
Gammaproteobacteria
Acinetobacter sp. LW15 [NIFO]
117
42
-
His
GTG
[ENA]
¡û
>W2010158276
CAAJGR010000119
Gammaproteobacteria
Rheinheimera sp. BAL341 [CAAJGR]
78445
78370
-
His
GTG
[ENA]
¡û
>W2010520917
JAANID010000029
Gammaproteobacteria
Acinetobacter sp. 187 [JAANID]
3092
3017
-
His
GTG
[ENA]
¡û
>W2010520989
JAANIE010000014
Gammaproteobacteria
Acinetobacter sp. 194 [JAANIE]
2925
2850
-
His
GTG
[ENA]
¡û
>W2010613759
JABSOD010000019
Gammaproteobacteria
Rheinheimera sp. YQF-2 [JABSOD]
64991
64916
-
His
GTG
[ENA]
¡û
>W2010784585
LQXQ01000038
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
37816
37891
+
His
GTG
[ENA]
¡û
>W2010969051
NIFO01000030
Gammaproteobacteria
Acinetobacter sp. LW15 [NIFO]
40102
40177
+
His
GTG
[ENA]
¡û
>W2010969056
NIFO01000074
Gammaproteobacteria
Acinetobacter sp. LW15 [NIFO]
117
42
-
His
GTG
[ENA]
¡û
>W2011153693
OBEB01000006
Gammaproteobacteria
Rheinheimera tuosuensis CGMCC 1.12461 [OBEB]
122987
123062
+
His
GTG
[ENA]
¡û
>W2011206622
PNRD01000003
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
552871
552796
-
His
GTG
[ENA]
¡û
>W2011364368
RAXT01000011
Gammaproteobacteria
Acinetobacter sp. WCHAc060115 [RAXT]
2744
2669
-
His
GTG
[ENA]
¡û
>W2011600187
SIRR01000005
Gammaproteobacteria
Rheinheimera pleomorphica PKS7 [SIRR]
143479
143404
-
His
GTG
[ENA]
¡û
>W2110049464
BMYR01000001
Gammaproteobacteria
Alishewanella tabrizica KCTC 23723 [BMYR]
396850
396775
-
His
GTG
[ENA]
¡û
>W2110051863
BNAO01000002
Gammaproteobacteria
Alishewanella longhuensis CGMCC 1.7003 [BNAO]
301981
301906
-
His
GTG
[ENA]
¡û
>W2110416424
JAEINI020000001
Gammaproteobacteria
Alishewanella sp. 16-MA [JAEINI]
530487
530562
+
His
GTG
[ENA]
¡û
>W2110444816
JAERPS020000003
Gammaproteobacteria
Rheinheimera sp. MA13 [JAERPS]
403518
403443
-
His
GTG
[ENA]
¡û
>W2110445386
JAERQO010000004
Gammaproteobacteria
Rheinheimera sp. MA-13 [JAERQO]
144327
144402
+
His
GTG
[ENA]
¡û
>W2110559681
JAGKQR010000003
Gammaproteobacteria
Rheinheimera sp. GL-53 [JAGKQR]
160388
160463
+
His
GTG
[ENA]
¡û
>W2110559743
JAGKQS010000003
Gammaproteobacteria
Rheinheimera sp. GL-15-2-5 [JAGKQS]
160388
160463
+
His
GTG
[ENA]
¡û
>W2110562894
JAGPNM010000003
Gammaproteobacteria
Rheinheimera sp. GL-53 [JAGPNM]
160388
160463
+
His
GTG
[ENA]
¡û
>W2110641221
JAHRID010000001
Gammaproteobacteria
Rheinheimera sp. SM2107 [JAHRID]
639227
639152
-
His
GTG
[ENA]
¡û
>C201227883
CP049801
Gammaproteobacteria
Acinetobacter sp. 323-1 [CP049801]
816315
816390
+
His
GTG
-
¡û
>C211075738
CP048659
Gammaproteobacteria
Acinetobacter piscicola YH12207_T [CP048659]
3073172
3073097
-
His
GTG
-
¡û
>W2110717493
JAJAVQ010000003
Gammaproteobacteria
Rheinheimera aquimaris KCTC 12840 [JAJAVQ]
208963
208888
-
His
GTG
[ENA]
¡û
>C241139057
CP049916
Gammaproteobacteria
Acinetobacter lanii 185 [CP049916]
2701925
2701850
-
His
GTG
-
¡û
>W1511566775
LAHO01000028
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
171
96
-
His
GTG
[ENA]
¡û
>W1511566795
LAHP01000003
Gammaproteobacteria
Arsukibacterium sp. MJ3 [LAHP]
128355
128280
-
His
GTG
[ENA]
¡û
>W11163736
AFIE01000013
Gammaproteobacteria
Acinetobacter sp. P8-3-8 [AFIE]
71774
71849
+
His
GTG
[ENA]
¡û
>W121040577
AHTH01000048
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
93353
93428
+
His
GTG
[ENA]
¡û
>W121087031
AKKU01000011
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
444034
443959
-
His
GTG
[ENA]
¡û
>W121104118
ALAB01000010
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
9944
10019
+
His
GTG
[ENA]
¡û
>W121124677
BAFK01000007
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
45221
45146
-
His
GTG
[ENA]
¡û
>W121124680
BAFK01000007
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
44888
44813
-
His
GTG
[ENA]
¡û
>W1610768041
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
1141567
1141642
+
His
GTG
[ENA]
¡û
>W1710533932
FNRM01000009
Gammaproteobacteria
Alkalimonas amylolytica [FNRM]
34568
34493
-
His
GTG
[ENA]
¡û
>W1710540883
FNXF01000004
Gammaproteobacteria
Rheinheimera pacifica [FNXF]
37203
37278
+
His
GTG
[ENA]
¡û
>W1710602230
FUYB01000001
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
142818
142743
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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