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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268525 (35 seq.)
>W131222382
AUBF01000004
Actinomycetota
Schaalia suimastitidis DSM 15538 [AUBF]
311444
311371
-
Lys
CTT
[ENA]
¡û
>W131222383
AUBF01000004
Actinomycetota
Schaalia suimastitidis DSM 15538 [AUBF]
311360
311287
-
Lys
CTT
[ENA]
¡û
>W1711621745
MPDM01000002
Actinomycetota
Boudabousia marimammalium [MPDM]
38007
38080
+
Lys
CTT
[ENA]
¡û
>W1711621746
MPDM01000002
Actinomycetota
Boudabousia marimammalium [MPDM]
38100
38173
+
Lys
CTT
[ENA]
¡û
>W1711660637
MQSU01000004
Actinomycetota
Boudabousia liubingyangii VUL4_1 [MQSU]
285711
285638
-
Lys
CTT
[ENA]
¡û
>W1711660638
MQSU01000004
Actinomycetota
Boudabousia liubingyangii VUL4_1 [MQSU]
285603
285530
-
Lys
CTT
[ENA]
¡û
>W1711660671
MQSV01000004
Actinomycetota
Boudabousia liubingyangii VUL4_2 [MQSV]
68542
68615
+
Lys
CTT
[ENA]
¡û
>W1711660672
MQSV01000004
Actinomycetota
Boudabousia liubingyangii VUL4_2 [MQSV]
68650
68723
+
Lys
CTT
[ENA]
¡û
>C171068119
CP017812
Actinomycetota
Boudabousia tangfeifanii VUL4_3 [CP017812]
940964
940889
-
Lys
CTT
-
¡û
>C171068120
CP017812
Actinomycetota
Boudabousia tangfeifanii VUL4_3 [CP017812]
940868
940795
-
Lys
CTT
-
¡û
>WENV180690226
OCZS010000918
[OCZS] soil metagenome; soil
9979
10052
+
Lys
CTT
[ENA]
¡û
>WENV180691316
OCZS010099747
[OCZS] soil metagenome; soil
851
924
+
Lys
CTT
[ENA]
¡û
>WENV180691672
OCZS010180970
[OCZS] soil metagenome; soil
594
667
+
Lys
CTT
[ENA]
¡û
>WENV170575145
FLYN01036441
[FLYN] hot springs metagenome; Sediment
217
142
-
Lys
CTT
[ENA]
¡û
>W141757772
JNYD01000010
Actinomycetota
Pseudonocardia autotrophica [JNYD]
55155
55082
-
Lys
CTT
[ENA]
¡û
>SRA1014827
SRR023845.332730
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
193
120
-
Lys
CTT
[SRA]
>W2010521639
JAANNO010000003
Actinomycetota
Motilibacter sp. K478 [JAANNO]
403966
404039
+
Lys
CTT
[ENA]
¡û
>W2010521675
JAANNP010000001
Actinomycetota
Motilibacter sp. E257 [JAANNP]
742685
742758
+
Lys
CTT
[ENA]
¡û
>W2010578669
JAAXKY010000091
Actinomycetota
Pseudonocardia xinjiangensis JCM 11839 [JAAXKY]
2339
2414
+
Lys
CTT
[ENA]
¡û
>W2010668693
JACBZS010000001
Actinomycetota
Naumannella cuiyingiana DSM 103164 [JACBZS]
781322
781248
-
Lys
CTT
[ENA]
¡û
>W2010691732
JACGWT010000006
Actinomycetota
Friedmanniella endophytica DSM 100723 [JACGWT]
407894
407969
+
Lys
CTT
[ENA]
¡û
>W2010719100
JACHZG010000001
Actinomycetota
Friedmanniella antarctica DSM 11053 [JACHZG]
910504
910431
-
Lys
CTT
[ENA]
¡û
>W2011654096
SOAW01000001
Actinomycetota
Naumannella halotolerans DSM 24323 [SOAW]
1838427
1838353
-
Lys
CTT
[ENA]
¡û
>W2110032389
BMMZ01000004
Actinomycetota
Microlunatus endophyticus CGMCC 4.7306 [BMMZ]
50863
50788
-
Lys
CTT
[ENA]
¡û
>W2110458680
JAFBCF010000001
Actinomycetota
Microlunatus panaciterrae DSM 18662 [JAFBCF]
3017751
3017676
-
Lys
CTT
[ENA]
¡û
>W2110553522
JAGIOB010000001
Actinomycetota
Microlunatus capsulatus DSM 12936 [JAGIOB]
1300810
1300883
+
Lys
CTT
[ENA]
¡û
>W2110596206
JAHDTH010000002
Actinomycetota
Pseudonocardia sp. H11425 [JAHDTH]
5975
6050
+
Lys
CTT
[ENA]
¡û
>W2110613575
JAHKRK010000021
Actinomycetota
Pseudonocardia nigra DSM 104088 [JAHKRK]
20665
20740
+
Lys
CTT
[ENA]
¡û
>W2110648443
JAHUUJ010000005
Actinomycetota
Actinomycetaceae bacterium TAE3-ERU4 [JAHUUJ]
64000
64073
+
Lys
CTT
[ENA]
¡û
>W2110648444
JAHUUJ010000005
Actinomycetota
Actinomycetaceae bacterium TAE3-ERU4 [JAHUUJ]
64110
64183
+
Lys
CTT
[ENA]
¡û
>C211208123
CP065521
Actinomycetota
Schaalia sp. 19OD2882 [CP065521]
1068151
1068076
-
Lys
CTT
-
¡û
>C211208124
CP065521
Actinomycetota
Schaalia sp. 19OD2882 [CP065521]
1068041
1067968
-
Lys
CTT
-
¡û
>W2310023194
BSFQ01000013
Actinomycetota
Pseudonocardia halophobica VKM Ac-1069 [BSFQ]
55153
55080
-
Lys
CTT
[ENA]
¡û
>C11114890
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
4166571
4166646
+
Lys
CTT
[Ensembl]
¡û
>W1710550126
FOFA01000002
Actinomycetota
Microlunatus flavus flava [FOFA]
296650
296575
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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