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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268675 (33 seq.)
>W1710809741
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
598
673
+
Thr
TGT
[ENA]
¡û
>WENV180293186
OBIX01007427
[OBIX] human gut metagenome; human gut
585
512
-
Thr
TGT
[ENA]
¡û
>WENV180346825
OBLN01327826
[OBLN] sediment metagenome; sediment
227
152
-
Thr
TGT
[ENA]
¡û
>W141150079
AXAC01000022
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
271
346
+
Thr
TGT
[ENA]
¡û
>W141150091
AXAC01000033
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
56460
56385
-
Thr
TGT
[ENA]
¡û
>WENV170692609
LGOV01016271
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
191
116
-
Thr
TGT
[ENA]
¡û
>WENV170695975
LGVE01193373
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1771
1696
-
Thr
TGT
[ENA]
¡û
>WENV170718252
LSQX01068081
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
156
81
-
Thr
TGT
[ENA]
¡û
>WENV170719933
LSQX01134075
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
156
81
-
Thr
TGT
[ENA]
¡û
>WENV170720573
LSQX01157830
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
61502
61577
+
Thr
TGT
[ENA]
¡û
>WENV170721459
LSQX01191175
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7524
7599
+
Thr
TGT
[ENA]
¡û
>WENV170725067
LSQX01329327
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4665
4740
+
Thr
TGT
[ENA]
¡û
>WENV170726637
LSQX01388340
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18163
18238
+
Thr
TGT
[ENA]
¡û
>W2011502490
RXYA01000008
Bacillota
Acetobacterium paludosum DSM 8237 [RXYA]
177748
177673
-
Thr
TGT
[ENA]
¡û
>W2011502567
RXYB01000055
Bacillota
Acetobacterium tundrae DSM 917 [RXYB]
396
321
-
Thr
TGT
[ENA]
¡û
>W2011502614
RXYC01000042
Bacillota
Acetobacterium bakii DSM 8239 [RXYC]
288
213
-
Thr
TGT
[ENA]
¡û
>W2011847157
UHJK01000001
Bacillota
Acetobacterium bakii [UHJK]
2724988
2725063
+
Thr
TGT
[ENA]
¡û
>W2011847198
UHJK01000001
Bacillota
Acetobacterium bakii [UHJK]
347573
347498
-
Thr
TGT
[ENA]
¡û
>W2011861246
UOGO01000001
Bacillota
Acetobacterium bakii [UOGO]
2724988
2725063
+
Thr
TGT
[ENA]
¡û
>W2011861287
UOGO01000001
Bacillota
Acetobacterium bakii [UOGO]
347573
347498
-
Thr
TGT
[ENA]
¡û
>W2012131266
VSLA01000011
Bacillota
Acetobacterium wieringae JM [VSLA]
36463
36388
-
Thr
TGT
[ENA]
¡û
>W2012131286
VSLA01000024
Bacillota
Acetobacterium wieringae JM [VSLA]
160
235
+
Thr
TGT
[ENA]
¡û
>C231248031
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
697233
697308
+
Thr
TGT
-
¡û
>C231248055
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
1186958
1187033
+
Thr
TGT
-
¡û
>C231394998
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
635376
635451
+
Thr
TGT
-
¡û
>C231395022
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
1150172
1150247
+
Thr
TGT
-
¡û
>W2110783241
WJBC01000070
Bacillota
Acetobacterium fimetarium DER-2019 [WJBC]
578
503
-
Thr
TGT
[ENA]
¡û
>W2110783277
WJBD01000021
Bacillota
Acetobacterium paludosum DER-2019 [WJBD]
56434
56359
-
Thr
TGT
[ENA]
¡û
>W2110783338
WJBE01000025
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
39008
38933
-
Thr
TGT
[ENA]
¡û
>W2110783346
WJBE01000040
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
5151
5076
-
Thr
TGT
[ENA]
¡û
>W2130044992
WJBB01000063
Bacillota
Acetobacterium tundrae DER-2019 [WJBB]
396
321
-
Thr
TGT
[ENA]
¡û
>C121003911
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3340259
3340184
-
Thr
TGT
[Ensembl]
¡û
>C121003935
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2815399
2815324
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK