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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268896 (68 seq.)
>w012138
AAMD01000032
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
52592
52520
-
Thr
CGT
[ENA]
¡û
>WENV180016109
FSUC01000467
[FSUC] metagenome; soil
1299
1374
+
Thr
CGT
[ENA]
¡û
>C191128664
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
4286421
4286496
+
Thr
CGT
-
¡û
>W141695170
JMCB01000004
Myxococcota
Hyalangium minutum [JMCB]
227473
227548
+
Thr
CGT
[ENA]
¡û
>W141695280
JMCC01000081
Myxococcota
Enhygromyxa salina [JMCC]
87013
87088
+
Thr
CGT
[ENA]
¡û
>W1810884660
QUMU01000001
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
373224
373299
+
Thr
CGT
[ENA]
¡û
>C151083590
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
7871754
7871679
-
Thr
CGT
[Ensembl]
¡û
>W2010437793
JAAAPJ010000019
Myxococcota
Corallococcus sp. c25j21 [JAAAPJ]
2297
2222
-
Thr
CGT
[ENA]
¡û
>W2010437851
JAAAPK010000010
Myxococcota
Corallococcus exiguus DSM 14696 [JAAAPK]
405273
405348
+
Thr
CGT
[ENA]
¡û
>W2010489317
JAAIXZ010000017
Myxococcota
Pyxidicoccus sp. AB060A [JAAIXZ]
48682
48607
-
Thr
CGT
[ENA]
¡û
>W2010489388
JAAIYA010000027
Myxococcota
Pyxidicoccus sp. CA032A [JAAIYA]
117764
117689
-
Thr
CGT
[ENA]
¡û
>W2010587745
JABBJJ010000022
Myxococcota
Pyxidicoccus fallax DSM 14698 [JABBJJ]
71045
70970
-
Thr
CGT
[ENA]
¡û
>W2010591439
JABEKY010000204
Myxococcota
Corallococcus exiguus AB016 [JABEKY]
84
159
+
Thr
CGT
[ENA]
¡û
>W2010591480
JABEKZ010000064
Myxococcota
Corallococcus exiguus AB031 [JABEKZ]
5540
5465
-
Thr
CGT
[ENA]
¡û
>W2010591527
JABELA010000005
Myxococcota
Corallococcus exiguus AB051 [JABELA]
60086
60161
+
Thr
CGT
[ENA]
¡û
>W2010591604
JABELB010000126
Myxococcota
Corallococcus exiguus CA048 [JABELB]
84
159
+
Thr
CGT
[ENA]
¡û
>W2010598287
JABFJV010000078
Myxococcota
Corallococcus exercitus AB043B [JABFJV]
9665
9740
+
Thr
CGT
[ENA]
¡û
>W2010598336
JABFJW010000026
Myxococcota
Corallococcus exercitus CA046A [JABFJW]
34847
34922
+
Thr
CGT
[ENA]
¡û
>W2010598389
JABFJX010000024
Myxococcota
Corallococcus carmarthensis CA046B [JABFJX]
609
534
-
Thr
CGT
[ENA]
¡û
>W2010598443
JABFJY010000052
Myxococcota
Corallococcus coralloides CA044C [JABFJY]
8772
8697
-
Thr
CGT
[ENA]
¡û
>W2010603465
JABJTR010000107
Myxococcota
Pyxidicoccus fallax CA059B [JABJTR]
87
162
+
Thr
CGT
[ENA]
¡û
>W2010603535
JABJTS010000024
Myxococcota
Corallococcus exiguus AB032A [JABJTS]
15790
15715
-
Thr
CGT
[ENA]
¡û
>W2010603593
JABJTT010000028
Myxococcota
Corallococcus exiguus AB038A [JABJTT]
866
791
-
Thr
CGT
[ENA]
¡û
>W2010603694
JABJTU010000600
Myxococcota
Corallococcus exiguus AB039A [JABJTU]
93
168
+
Thr
CGT
[ENA]
¡û
>W2010610082
JABNNE010000649
Myxococcota
Corallococcus exiguus CA046D [JABNNE]
84
159
+
Thr
CGT
[ENA]
¡û
>W2010610098
JABNNF010000027
Myxococcota
Corallococcus exiguus AM006 [JABNNF]
825
750
-
Thr
CGT
[ENA]
¡û
>W2010610192
JABNNG010000608
Myxococcota
Corallococcus exiguus AM007 [JABNNG]
5544
5469
-
Thr
CGT
[ENA]
¡û
>W2011362934
RAVW01000158
Myxococcota
Corallococcus sp. AB043A [RAVW]
9544
9619
+
Thr
CGT
[ENA]
¡û
>W2011362979
RAVX01000003
Myxococcota
Corallococcus sp. AB011P [RAVX]
95294
95369
+
Thr
CGT
[ENA]
¡û
>W2011363047
RAVY01000033
Myxococcota
Corallococcus sp. CA054B [RAVY]
19362
19287
-
Thr
CGT
[ENA]
¡û
>W2011363116
RAVZ01000313
Myxococcota
Corallococcus sp. CA054A [RAVZ]
9561
9636
+
Thr
CGT
[ENA]
¡û
>W2011363151
RAWA01000068
Myxococcota
Corallococcus sp. CA053C [RAWA]
21376
21301
-
Thr
CGT
[ENA]
¡û
>W2011363186
RAWB01000008
Myxococcota
Corallococcus sp. CA051B [RAWB]
4667
4742
+
Thr
CGT
[ENA]
¡û
>W2011363244
RAWC01000028
Myxococcota
Corallococcus sp. CA049B [RAWC]
26985
26910
-
Thr
CGT
[ENA]
¡û
>W2011363335
RAWD01000512
Myxococcota
Corallococcus sp. CA047B [RAWD]
2401
2476
+
Thr
CGT
[ENA]
¡û
>W2011363355
RAWE01000048
Myxococcota
Corallococcus sp. CA043D [RAWE]
618
543
-
Thr
CGT
[ENA]
¡û
>W2011363389
RAWF01000002
Myxococcota
Corallococcus sp. CA041A [RAWF]
52485
52410
-
Thr
CGT
[ENA]
¡û
>W2011363489
RAWG01000476
Myxococcota
Corallococcus sp. CA040B [RAWG]
4066
4141
+
Thr
CGT
[ENA]
¡û
>W2011363544
RAWH01000453
Myxococcota
Corallococcus sp. CA031C [RAWH]
1830
1755
-
Thr
CGT
[ENA]
¡û
>W2011363579
RAWI01000317
Myxococcota
Corallococcus sp. CA031B [RAWI]
9381
9456
+
Thr
CGT
[ENA]
¡û
>W2011363616
RAWJ01000064
Myxococcota
Corallococcus sp. AB050B [RAWJ]
16902
16977
+
Thr
CGT
[ENA]
¡û
>W2011363662
RAWK01000053
Myxococcota
Corallococcus sp. AB050A [RAWK]
9519
9594
+
Thr
CGT
[ENA]
¡û
>W2011363727
RAWL01000113
Myxococcota
Corallococcus sp. AB049A [RAWL]
14392
14467
+
Thr
CGT
[ENA]
¡û
>W2011363773
RAWM01000031
Myxococcota
Corallococcus sp. AB047A [RAWM]
27067
26992
-
Thr
CGT
[ENA]
¡û
>W2011363819
RAWN01000012
Myxococcota
Corallococcus sp. AB045 [RAWN]
61515
61590
+
Thr
CGT
[ENA]
¡û
>W2011363904
RAWO01000004
Myxococcota
Corallococcus sp. AB038B [RAWO]
420529
420604
+
Thr
CGT
[ENA]
¡û
>W2011363932
RAWP01000008
Myxococcota
Corallococcus sp. AB032C [RAWP]
67289
67214
-
Thr
CGT
[ENA]
¡û
>W2011363990
RAWQ01000014
Myxococcota
Corallococcus sp. AB030 [RAWQ]
27931
27856
-
Thr
CGT
[ENA]
¡û
>W2011364060
RAWR01000079
Myxococcota
Corallococcus sp. AB018 [RAWR]
81
156
+
Thr
CGT
[ENA]
¡û
>W2011364113
RAWS01000069
Myxococcota
Corallococcus sp. AB004 [RAWS]
35522
35597
+
Thr
CGT
[ENA]
¡û
>W2012011434
VEWR01000007
Myxococcota
Corallococcus exiguus 14696 [VEWR]
35180
35105
-
Thr
CGT
[ENA]
¡û
>W2012071707
VKLU01000010
Myxococcota
Corallococcus sp. Z5C101001 [VKLU]
220135
220210
+
Thr
CGT
[ENA]
¡û
>W2110143252
JAAIYO010000003
Myxococcota
Corallococcus sp. ZKHCc1 1396 [JAAIYO]
344814
344889
+
Thr
CGT
[ENA]
¡û
>W2110395354
JADWYI010000001
Myxococcota
Archangium primigenium ATCC 29037 [JADWYI]
6893958
6893883
-
Thr
CGT
[ENA]
¡û
>W2110502847
JAFIMS010000002
Myxococcota
Corallococcus sp. NCSPR001 [JAFIMS]
5809781
5809706
-
Thr
CGT
[ENA]
¡û
>W2110502866
JAFIMT010000001
Myxococcota
Corallococcus exiguus NCCRE002 [JAFIMT]
3385763
3385838
+
Thr
CGT
[ENA]
¡û
>W2110502965
JAFIMU010000010
Myxococcota
Corallococcus macrosporus ATCC 29039 [JAFIMU]
441775
441700
-
Thr
CGT
[ENA]
¡û
>W2110659289
JAHXBG010000005
Myxococcota
Cystobacter gracilis DSM 14753 [JAHXBG]
266121
266048
-
Thr
CGT
[ENA]
¡û
>W2110659345
JAHXBH010000003
Myxococcota
Stigmatella hybrida DSM 14722 [JAHXBH]
310239
310164
-
Thr
CGT
[ENA]
¡û
>W2110692386
JAIQDD010000014
Myxococcota
Corallococcus sp. AS-1-12 [JAIQDD]
116076
116151
+
Thr
CGT
[ENA]
¡û
>W2110692417
JAIQDE010000005
Myxococcota
Corallococcus sp. AS-1-6 [JAIQDE]
103604
103529
-
Thr
CGT
[ENA]
¡û
>W2110692563
JAIQDG010000022
Myxococcota
Myxococcus sp. RHSTA-1-4 [JAIQDG]
44591
44666
+
Thr
CGT
[ENA]
¡û
>C211372439
CP079946
Myxococcota
Corallococcus sp. EGB [CP079946]
4335172
4335247
+
Thr
CGT
-
¡û
>C231555254
CP114039
Myxococcota
Corallococcus sp. NCRR [CP114039]
6325022
6325097
+
Thr
CGT
-
¡û
>C11119140
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
5754960
5754885
-
Thr
CGT
[Ensembl]
¡û
>C121012063
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
4409823
4409898
+
Thr
CGT
[Ensembl]
¡û
>W1710544111
FOAP01000004
Myxococcota
Stigmatella aurantiaca [FOAP]
372168
372243
+
Thr
CGT
[ENA]
¡û
>W1710554328
FOIJ01000001
Myxococcota
Stigmatella erecta [FOIJ]
140325
140400
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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