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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268924 (90 seq.)
>W131211424
ATMR01000114
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
446
371
-
Lys
TTT
[ENA]
¡û
>W131211425
ATMR01000114
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
80
5
-
Lys
TTT
[ENA]
¡û
>W131224951
AUDE01000018
Bacteroidota
Psychroserpens burtonensis DSM 12212 [AUDE]
13815
13890
+
Lys
TTT
[ENA]
¡û
>W08004304
ABHI01000004
Bacteroidota
Flavobacteriales bacterium ALC-1 [ABHI]
127340
127415
+
Lys
TTT
[ENA]
¡û
>WENV182561074
OJDV01003744
[OJDV] seawater metagenome; Sea water
1625
1698
+
Lys
TTT
[ENA]
¡û
>W141276352
JADS01000016
Bacteroidota
Olleya sp. VCSA23 [JADS]
20019
20094
+
Lys
TTT
[ENA]
¡û
>W141276353
JADS01000016
Bacteroidota
Olleya sp. VCSA23 [JADS]
20160
20235
+
Lys
TTT
[ENA]
¡û
>W141276382
JADT01000005
Bacteroidota
Olleya sp. VCSM12 [JADT]
20310
20385
+
Lys
TTT
[ENA]
¡û
>W141276383
JADT01000005
Bacteroidota
Olleya sp. VCSM12 [JADT]
20451
20526
+
Lys
TTT
[ENA]
¡û
>WENV170539743
CEWR01289616
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1766
1691
-
Lys
TTT
[ENA]
¡û
>WENV170782713
MAAC01011179
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
124947
124872
-
Lys
TTT
[ENA]
¡û
>WENV170783486
MAAC01017449
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
37440
37515
+
Lys
TTT
[ENA]
¡û
>C181113337
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
2152691
2152618
-
Lys
TTT
-
¡û
>C181202815
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
3355948
3355875
-
Lys
TTT
-
¡û
>C181202816
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
3355807
3355734
-
Lys
TTT
-
¡û
>C191083421
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
5337953
5337880
-
Lys
TTT
-
¡û
>C191083422
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
5337799
5337726
-
Lys
TTT
-
¡û
>C191166143
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
143886
143959
+
Lys
TTT
-
¡û
>W1810157333
PJBW01000005
Bacteroidota
Olleya sp. 1-3 [PJBW]
20055
20128
+
Lys
TTT
[ENA]
¡û
>W1810157334
PJBW01000005
Bacteroidota
Olleya sp. 1-3 [PJBW]
20184
20257
+
Lys
TTT
[ENA]
¡û
>W1810759616
QPJO01000003
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
22957
23030
+
Lys
TTT
[ENA]
¡û
>W1810759617
QPJO01000003
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
23175
23248
+
Lys
TTT
[ENA]
¡û
>W1810787632
QRDV01000007
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
23618
23691
+
Lys
TTT
[ENA]
¡û
>W1810787633
QRDV01000007
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
23963
24036
+
Lys
TTT
[ENA]
¡û
>W1810788335
QREI01000003
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
525224
525151
-
Lys
TTT
[ENA]
¡û
>W1810788336
QREI01000003
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
524857
524784
-
Lys
TTT
[ENA]
¡û
>W1810885428
QUNH01000005
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
25205
25278
+
Lys
TTT
[ENA]
¡û
>W1810885429
QUNH01000005
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
25542
25615
+
Lys
TTT
[ENA]
¡û
>C151002324
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
27570
27645
+
Lys
TTT
[Ensembl]
¡û
>W2010597069
JABFDC010000005
Bacteroidota
Winogradskyella undariae Ha325 [JABFDC]
22054
22127
+
Lys
TTT
[ENA]
¡û
>W2010597102
JABFDD010000005
Bacteroidota
Winogradskyella undariae Z3185 [JABFDD]
22832
22905
+
Lys
TTT
[ENA]
¡û
>W2010597103
JABFDD010000005
Bacteroidota
Winogradskyella undariae Z3185 [JABFDD]
23040
23113
+
Lys
TTT
[ENA]
¡û
>W2010597159
JABFDE010000019
Bacteroidota
Winogradskyella sp. Ha767 [JABFDE]
13460
13387
-
Lys
TTT
[ENA]
¡û
>W2010597186
JABFDF010000006
Bacteroidota
Winogradskyella sp. HL116 [JABFDF]
21447
21520
+
Lys
TTT
[ENA]
¡û
>W2010597187
JABFDF010000006
Bacteroidota
Winogradskyella sp. HL116 [JABFDF]
21802
21875
+
Lys
TTT
[ENA]
¡û
>W2010597217
JABFDG010000002
Bacteroidota
Winogradskyella sp. HL634 [JABFDG]
25761
25834
+
Lys
TTT
[ENA]
¡û
>W2010597218
JABFDG010000002
Bacteroidota
Winogradskyella sp. HL634 [JABFDG]
26107
26180
+
Lys
TTT
[ENA]
¡û
>W2010597261
JABFDH010000005
Bacteroidota
Winogradskyella sp. HL4150 [JABFDH]
309572
309499
-
Lys
TTT
[ENA]
¡û
>W2010597282
JABFDI010000013
Bacteroidota
Winogradskyella pacifica R3187 [JABFDI]
32151
32224
+
Lys
TTT
[ENA]
¡û
>W2010597283
JABFDI010000013
Bacteroidota
Winogradskyella pacifica R3187 [JABFDI]
32517
32590
+
Lys
TTT
[ENA]
¡û
>W2010597334
JABFDJ010000008
Bacteroidota
Winogradskyella sp. Z738 [JABFDJ]
23001
23074
+
Lys
TTT
[ENA]
¡û
>W2010597335
JABFDJ010000008
Bacteroidota
Winogradskyella sp. Z738 [JABFDJ]
23223
23296
+
Lys
TTT
[ENA]
¡û
>W2010597357
JABFDK010000002
Bacteroidota
Winogradskyella sp. Z3138 [JABFDK]
348547
348474
-
Lys
TTT
[ENA]
¡û
>W2010597358
JABFDK010000002
Bacteroidota
Winogradskyella sp. Z3138 [JABFDK]
348182
348109
-
Lys
TTT
[ENA]
¡û
>W2010598119
JABFHO010000001
Bacteroidota
Winogradskyella sp. Z963 [JABFHO]
3570835
3570908
+
Lys
TTT
[ENA]
¡û
>W2010598120
JABFHO010000001
Bacteroidota
Winogradskyella sp. Z963 [JABFHO]
3571181
3571254
+
Lys
TTT
[ENA]
¡û
>W2010612706
JABRWP010000011
Bacteroidota
Winogradskyella eckloniae EC29 [JABRWP]
101732
101659
-
Lys
TTT
[ENA]
¡û
>W2010612719
JABRWQ010000002
Bacteroidota
Winogradskyella litoriviva KMM6491 [JABRWQ]
21399
21472
+
Lys
TTT
[ENA]
¡û
>W2010631843
JABTEL010000002
Bacteroidota
Winogradskyella undariae CCUG 63832 [JABTEL]
484354
484281
-
Lys
TTT
[ENA]
¡û
>W2010631866
JABTEL010000023
Bacteroidota
Winogradskyella undariae CCUG 63832 [JABTEL]
77
4
-
Lys
TTT
[ENA]
¡û
>W2011355428
RAQJ01000004
Bacteroidota
Ichthyenterobacterium magnum DSM 26283 [RAQJ]
23235
23308
+
Lys
TTT
[ENA]
¡û
>W2011367453
RAZW01000114
Bacteroidota
Aquimarina sp. BL5 [RAZW]
2912
2839
-
Lys
TTT
[ENA]
¡û
>W2011698213
SUPL01000010
Bacteroidota
Lacinutrix sp. CAU 1491 [SUPL]
28187
28260
+
Lys
TTT
[ENA]
¡û
>W2012107697
VOSB01000015
Bacteroidota
Psychroserpens burtonensis ACAM 167 [VOSB]
13488
13561
+
Lys
TTT
[ENA]
¡û
>W2012409096
WOWS01000008
Bacteroidota
Winogradskyella sp. HL2-2 [WOWS]
19681
19754
+
Lys
TTT
[ENA]
¡û
>W2012409097
WOWS01000008
Bacteroidota
Winogradskyella sp. HL2-2 [WOWS]
20039
20112
+
Lys
TTT
[ENA]
¡û
>W2110240108
JACNMJ010000010
Bacteroidota
Flavihalobacter algicola Dm15 [JACNMJ]
23746
23819
+
Lys
TTT
[ENA]
¡û
>W2110242786
JACOME010000007
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOME]
21218
21291
+
Lys
TTT
[ENA]
¡û
>W2110246526
JACOQD010000007
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOQD]
21218
21291
+
Lys
TTT
[ENA]
¡û
>W2110326474
JADILU010000009
Bacteroidota
Arcticiflavibacter luteus SM1212 [JADILU]
25378
25451
+
Lys
TTT
[ENA]
¡û
>W2110361161
JADOET010000018
Bacteroidota
Winogradskyella marina F6397 [JADOET]
29978
30051
+
Lys
TTT
[ENA]
¡û
>W2110427932
JAEMEF010000005
Bacteroidota
Olleya sediminilitoris YSTF-M6 [JAEMEF]
221864
221791
-
Lys
TTT
[ENA]
¡û
>W2110427933
JAEMEF010000005
Bacteroidota
Olleya sediminilitoris YSTF-M6 [JAEMEF]
221723
221650
-
Lys
TTT
[ENA]
¡û
>W2110515456
JAFMPT010000014
Bacteroidota
Winogradskyella sp. E313 [JAFMPT]
20550
20623
+
Lys
TTT
[ENA]
¡û
>W2110611561
JAHKPN010000019
Bacteroidota
Winogradskyella psychrotolerans E3R09 [JAHKPN]
22727
22654
-
Lys
TTT
[ENA]
¡û
>W2110611562
JAHKPN010000019
Bacteroidota
Winogradskyella psychrotolerans E3R09 [JAHKPN]
22381
22306
-
Lys
TTT
[ENA]
¡û
>W2110611755
JAHKPS010000013
Bacteroidota
Winogradskyella psychrotolerans D3R19 [JAHKPS]
25785
25858
+
Lys
TTT
[ENA]
¡û
>W2110611756
JAHKPS010000013
Bacteroidota
Winogradskyella psychrotolerans D3R19 [JAHKPS]
26136
26209
+
Lys
TTT
[ENA]
¡û
>W2110668705
JAICBG010000001
Bacteroidota
Winogradskyella sp. SM1960 [JAICBG]
29887
29960
+
Lys
TTT
[ENA]
¡û
>C211117892
CP058981
Bacteroidota
Winogradskyella sp. HaHa_3_26 [CP058981]
418291
418364
+
Lys
TTT
-
¡û
>C211117893
CP058981
Bacteroidota
Winogradskyella sp. HaHa_3_26 [CP058981]
418498
418571
+
Lys
TTT
-
¡û
>C211118225
CP058987
Bacteroidota
Olleya sp. HaHaR_3_96 [CP058987]
2113198
2113125
-
Lys
TTT
-
¡û
>C231575681
CP116221
Bacteroidota
Psychroserpens sp. MSW6 [CP116221]
1037907
1037834
-
Lys
TTT
-
¡û
>C241155451
CP053348
Bacteroidota
Winogradskyella forsetii HL857 [CP053348]
1670093
1670020
-
Lys
TTT
-
¡û
>C241155474
CP053349
Bacteroidota
Winogradskyella forsetii HL6110 [CP053349]
2959338
2959265
-
Lys
TTT
-
¡û
>C241155523
CP053350
Bacteroidota
Winogradskyella forsetii SW133 [CP053350]
586270
586197
-
Lys
TTT
-
¡û
>C241155556
CP053351
Bacteroidota
Winogradskyella schleiferi Z215 [CP053351]
1615780
1615707
-
Lys
TTT
-
¡û
>C241155598
CP053352
Bacteroidota
Winogradskyella helgolandensis Z354 [CP053352]
1357181
1357108
-
Lys
TTT
-
¡û
>C241155599
CP053352
Bacteroidota
Winogradskyella helgolandensis Z354 [CP053352]
1356834
1356761
-
Lys
TTT
-
¡û
>W1511388596
JSWG01000001
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
27653
27728
+
Lys
TTT
[ENA]
¡û
>W1511505207
JXJO01000016
Bacteroidota
Psychroserpens damuponensis JCM 17632 [JXJO]
203251
203176
-
Lys
TTT
[ENA]
¡û
>W1511505238
JXJP01000008
Bacteroidota
Psychroserpens mesophilus JCM 13413 [JXJP]
20328
20401
+
Lys
TTT
[ENA]
¡û
>W1610060588
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2543
2618
+
Lys
TTT
[ENA]
¡û
>W1610060589
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2684
2759
+
Lys
TTT
[ENA]
¡û
>W1710057843
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2543
2618
+
Lys
TTT
[ENA]
¡û
>W1710057844
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2684
2759
+
Lys
TTT
[ENA]
¡û
>W1710516986
FNCZ01000002
Bacteroidota
Winogradskyella thalassocola [FNCZ]
444240
444165
-
Lys
TTT
[ENA]
¡û
>W1710516987
FNCZ01000002
Bacteroidota
Winogradskyella thalassocola [FNCZ]
443894
443819
-
Lys
TTT
[ENA]
¡û
>W1710565812
FORM01000004
Bacteroidota
Olleya namhaensis [FORM]
284886
284811
-
Lys
TTT
[ENA]
¡û
>W1710565813
FORM01000004
Bacteroidota
Olleya namhaensis [FORM]
284757
284682
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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