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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268949 (88 seq.)
>W1710863693
LMFI01000006
Actinomycetota
Nocardioides sp. Root140 [LMFI]
28540
28465
-
Asn
GTT
[ENA]
¡û
>W1710864910
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1355857
1355782
-
Asn
GTT
[ENA]
¡û
>W1710874066
LMNH01000003
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
844131
844204
+
Asn
GTT
[ENA]
¡û
>W1710874855
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1593567
1593640
+
Asn
GTT
[ENA]
¡û
>W1710880210
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
809671
809744
+
Asn
GTT
[ENA]
¡û
>W1710880663
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
29376
29301
-
Asn
GTT
[ENA]
¡û
>W1710880908
LMSQ01000021
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
12396
12471
+
Asn
GTT
[ENA]
¡û
>W1711126923
LUPL01000009
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
12568
12495
-
Asn
GTT
[ENA]
¡û
>W1711127120
LUPQ01000026
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
9203
9276
+
Asn
GTT
[ENA]
¡û
>WENV180015997
FSTU01000409
[FSTU] metagenome; soil
4389
4314
-
Asn
GTT
[ENA]
¡û
>W141242971
CAJA01000419
Actinomycetota
Tetrasphaera australiensis Ben110 [CAJA]
6014
5941
-
Asn
GTT
[ENA]
¡û
>W141243011
CAJB01000224
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
5368
5443
+
Asn
GTT
[ENA]
¡û
>W141243047
CAJC01000148
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
20009
19936
-
Asn
GTT
[ENA]
¡û
>WENV170011546
APMI01073370
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
426
351
-
Asn
GTT
[ENA]
¡û
>WENV170552170
CXWJ01042489
[CXWJ] wastewater metagenome; activated sludge
3587
3512
-
Asn
GTT
[ENA]
¡û
>WENV170978272
MTKZ01045115
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
387
462
+
Asn
GTT
[ENA]
¡û
>C191159933
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
2339883
2339810
-
Asn
GTT
-
¡û
>C191182494
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2293224
2293151
-
Asn
GTT
-
¡û
>W141564347
JIAR01000025
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
34344
34269
-
Asn
GTT
[ENA]
¡û
>W09103272
AAJB01000038
Actinomycetota
Nocardioides sp. JS614 [AAJB]
33023
33096
+
Asn
GTT
[ENA]
¡û
>W1810157291
PJBV01000012
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
214321
214396
+
Asn
GTT
[ENA]
¡û
>W1810626250
QHKY01000007
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
129111
129184
+
Asn
GTT
[ENA]
¡û
>W2010106213
BKAF01000057
Actinomycetota
Nocardioides psychrotolerans NBRC 108563 [BKAF]
9440
9515
+
Asn
GTT
[ENA]
¡û
>W2010603391
JABJRA010000011
Actinomycetota
Nocardioides sp. zg-DK7169 [JABJRA]
17018
16945
-
Asn
GTT
[ENA]
¡û
>W2010604548
JABJWT010000004
Actinomycetota
Nocardioides sp. MC1495 [JABJWT]
478782
478856
+
Asn
GTT
[ENA]
¡û
>W2010604598
JABJWU010000008
Actinomycetota
Nocardioides sp. Y192 [JABJWU]
19424
19350
-
Asn
GTT
[ENA]
¡û
>W2010669032
JACCAA010000001
Actinomycetota
Nocardioides daedukensis DSM 23819 [JACCAA]
3736719
3736792
+
Asn
GTT
[ENA]
¡û
>W2010670607
JACCBC010000001
Actinomycetota
Kineosphaera limosa DSM 14548 [JACCBC]
4607455
4607530
+
Asn
GTT
[ENA]
¡û
>W2010670706
JACCBE010000001
Actinomycetota
Nocardioides marinisabuli DSM 18965 [JACCBE]
3897917
3897844
-
Asn
GTT
[ENA]
¡û
>W2010681168
JACEFC010000008
Actinomycetota
Nocardioides sp. 1.0914 [JACEFC]
43310
43383
+
Asn
GTT
[ENA]
¡û
>W2010692022
JACGXA010000001
Actinomycetota
Nocardioides ginsengisegetis DSM 21349 [JACGXA]
1180542
1180617
+
Asn
GTT
[ENA]
¡û
>W2010715027
JACHWH010000002
Actinomycetota
Amycolatopsis bartoniae DSM 45807 [JACHWH]
350461
350388
-
Asn
GTT
[ENA]
¡û
>W2010744185
JACKXE010000001
Actinomycetota
Nocardioides sp. KIGAM211 [JACKXE]
3983894
3983969
+
Asn
GTT
[ENA]
¡û
>W2011751913
SZPY01000004
Actinomycetota
Nocardioides sp. dk3543 [SZPY]
6273
6200
-
Asn
GTT
[ENA]
¡û
>W2011821981
UFYA01000001
Actinomycetota
Dermatophilus congolensis NCTC7915 [UFYA]
991747
991820
+
Asn
GTT
[ENA]
¡û
>W2012065590
VJZB01000063
Actinomycetota
Amycolatopsis bartoniae DSM 45807 [VJZB]
20178
20251
+
Asn
GTT
[ENA]
¡û
>W2110018929
BMCK01000005
Actinomycetota
Nocardioides daphniae CCM 7403 [BMCK]
345476
345549
+
Asn
GTT
[ENA]
¡û
>W2110052210
BNAV01000005
Actinomycetota
Amycolatopsis bartoniae CGMCC 4.7679 [BNAV]
69754
69681
-
Asn
GTT
[ENA]
¡û
>W2110133186
CAKASO010000024
Actinomycetota
Nocardioides sp. Leaf374 [CAKASO]
59895
59968
+
Asn
GTT
[ENA]
¡û
>W2110138267
JAAFNI010000001
Actinomycetota
Dermatophilus congolensis BTSK40 [JAAFNI]
1003072
1003145
+
Asn
GTT
[ENA]
¡û
>W2110138512
JAAFNN010000001
Actinomycetota
Dermatophilus congolensis BTSK35 [JAAFNN]
1006709
1006782
+
Asn
GTT
[ENA]
¡û
>W2110138561
JAAFNO010000001
Actinomycetota
Dermatophilus congolensis BTSK34 [JAAFNO]
1010235
1010308
+
Asn
GTT
[ENA]
¡û
>W2110138658
JAAFNQ010000001
Actinomycetota
Dermatophilus congolensis BTSK32 [JAAFNQ]
1006459
1006532
+
Asn
GTT
[ENA]
¡û
>W2110138710
JAAFNR010000001
Actinomycetota
Dermatophilus congolensis BTSK31 [JAAFNR]
1010955
1011028
+
Asn
GTT
[ENA]
¡û
>W2110138926
JAAFNV010000001
Actinomycetota
Dermatophilus congolensis BTSK27 [JAAFNV]
1619440
1619367
-
Asn
GTT
[ENA]
¡û
>W2110138975
JAAFNW010000001
Actinomycetota
Dermatophilus congolensis BTSK26 [JAAFNW]
1630367
1630294
-
Asn
GTT
[ENA]
¡û
>W2110139142
JAAFOA010000001
Actinomycetota
Dermatophilus congolensis BTSK22 [JAAFOA]
1006100
1006173
+
Asn
GTT
[ENA]
¡û
>W2110139194
JAAFOB010000001
Actinomycetota
Dermatophilus congolensis BTSK21 [JAAFOB]
993193
993266
+
Asn
GTT
[ENA]
¡û
>W2110139243
JAAFOC010000001
Actinomycetota
Dermatophilus congolensis BTSK20 [JAAFOC]
1006491
1006564
+
Asn
GTT
[ENA]
¡û
>W2110139393
JAAFOF010000001
Actinomycetota
Dermatophilus congolensis BTSK17 [JAAFOF]
1011360
1011433
+
Asn
GTT
[ENA]
¡û
>W2110139563
JAAFOI010000001
Actinomycetota
Dermatophilus congolensis BTSK14 [JAAFOI]
1628156
1628083
-
Asn
GTT
[ENA]
¡û
>W2110139661
JAAFOK010000001
Actinomycetota
Dermatophilus congolensis BTSK12 [JAAFOK]
1629792
1629719
-
Asn
GTT
[ENA]
¡û
>W2110139736
JAAFOM010000001
Actinomycetota
Dermatophilus congolensis BTSK10 [JAAFOM]
1008016
1008089
+
Asn
GTT
[ENA]
¡û
>W2110139785
JAAFON010000001
Actinomycetota
Dermatophilus congolensis BTSK9 [JAAFON]
1006480
1006553
+
Asn
GTT
[ENA]
¡û
>W2110139834
JAAFOO010000001
Actinomycetota
Dermatophilus congolensis BTSK8 [JAAFOO]
993736
993809
+
Asn
GTT
[ENA]
¡û
>W2110139883
JAAFOP010000001
Actinomycetota
Dermatophilus congolensis BTSK7 [JAAFOP]
1011035
1011108
+
Asn
GTT
[ENA]
¡û
>W2110140150
JAAFOU010000001
Actinomycetota
Dermatophilus congolensis BTSK2 [JAAFOU]
1619207
1619134
-
Asn
GTT
[ENA]
¡û
>W2110140199
JAAFOV010000001
Actinomycetota
Dermatophilus congolensis BTSK1 [JAAFOV]
1619063
1618990
-
Asn
GTT
[ENA]
¡û
>W2110201528
JACDTV010000002
Actinomycetota
Nocardioides salarius DSM 18239 [JACDTV]
32041
31968
-
Asn
GTT
[ENA]
¡û
>W2110239661
JACMYC010000015
Actinomycetota
Nocardioides deserti SC8A-24 [JACMYC]
61499
61572
+
Asn
GTT
[ENA]
¡û
>W2110292601
JACYXE010000008
Actinomycetota
Agilicoccus flavus SYSU M44304 [JACYXE]
71345
71420
+
Asn
GTT
[ENA]
¡û
>W2110303543
JADCLL010000001
Actinomycetota
Nocardioides kribbensis DSM 16314 [JADCLL]
418929
418856
-
Asn
GTT
[ENA]
¡û
>W2110303579
JADCLM010000002
Actinomycetota
Nocardioides salarius DSM 18239 [JADCLM]
32041
31968
-
Asn
GTT
[ENA]
¡û
>W2110327937
JADKPN010000001
Actinomycetota
Nocardioides islandensis KCTC 19275 [JADKPN]
9044
8971
-
Asn
GTT
[ENA]
¡û
>W2110458399
JAFBBZ010000001
Actinomycetota
Nocardioides salarius DSM 18239 [JAFBBZ]
4015677
4015750
+
Asn
GTT
[ENA]
¡û
>W2110481401
JAFDVE010000009
Actinomycetota
Phycicoccus sp. CSK15P-2 [JAFDVE]
42703
42777
+
Asn
GTT
[ENA]
¡û
>W2110481424
JAFDVE010000021
Actinomycetota
Phycicoccus sp. CSK15P-2 [JAFDVE]
42807
42881
+
Asn
GTT
[ENA]
¡û
>W2110516080
JAFMSW010000001
Actinomycetota
Nocardioides sp. SYSU D00514 [JAFMSW]
3140285
3140360
+
Asn
GTT
[ENA]
¡û
>W2110516186
JAFMSY010000003
Actinomycetota
Nocardioides sp. SYSU D00778 [JAFMSY]
307847
307922
+
Asn
GTT
[ENA]
¡û
>C211032030
CP022296
Actinomycetota
Nocardioides sp. S5 [CP022296]
1723313
1723386
+
Asn
GTT
-
¡û
>C211137409
CP060712
Actinomycetota
Phycicoccus endophyticus JCM 31784 [CP060712]
939412
939485
+
Asn
GTT
-
¡û
>C211152997
CP061768
Actinomycetota
Nocardioides sp. MC1495 [CP061768]
2641999
2641925
-
Asn
GTT
-
¡û
>C211153044
CP061769
Actinomycetota
Nocardioides sp. ZJ1313 [CP061769]
2765638
2765565
-
Asn
GTT
-
¡û
>C241135257
CP049257
Actinomycetota
Nocardioides anomalus HKS04 [CP049257]
1625084
1625157
+
Asn
GTT
-
¡û
>C241176396
CP059163
Actinomycetota
Nocardioides marinisabuli DSM 18965 [CP059163]
4135894
4135821
-
Asn
GTT
-
¡û
>W2310010952
BNET01000003
Actinomycetota
Nocardioides sp. OK12 [BNET]
13126
13053
-
Asn
GTT
[ENA]
¡û
>W121126629
BAHD01000016
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
80552
80477
-
Asn
GTT
[ENA]
¡û
>W1610062599
BCNQ01000175
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
7817
7742
-
Asn
GTT
[ENA]
¡û
>W1610726039
LMFI01000006
Actinomycetota
Nocardioides sp. Root140 [LMFI]
28540
28465
-
Asn
GTT
[ENA]
¡û
>W1610727256
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1355857
1355782
-
Asn
GTT
[ENA]
¡û
>W1610736412
LMNH01000003
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
844131
844204
+
Asn
GTT
[ENA]
¡û
>W1610737201
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1593567
1593640
+
Asn
GTT
[ENA]
¡û
>W1610743254
LMSQ01000021
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
12396
12471
+
Asn
GTT
[ENA]
¡û
>W1710060075
BCNQ01000175
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
7817
7742
-
Asn
GTT
[ENA]
¡û
>W1710083201
BDJE01000025
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
13188
13113
-
Asn
GTT
[ENA]
¡û
>W1710083331
BDJG01000035
Actinomycetota
Nocardioides sp. PD653 [BDJG]
153870
153945
+
Asn
GTT
[ENA]
¡û
>W1710556290
FOKC01000003
Actinomycetota
Nocardioides alpinus [FOKC]
23961
23886
-
Asn
GTT
[ENA]
¡û
>W1710564156
FOQG01000036
Actinomycetota
Nocardioides psychrotolerans [FOQG]
588
513
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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